TRA2B protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TRA2B

Transformer 2 beta homolog. (288 aa)

Predicted Functional Partners:

ENSODEP00000015551

0.993

TRA2A

0.992

SRSF9

0.982

ENSODEP00000003095

0.979

ENSODEP00000004601

0.979

ENSODEP00000013137

0.979

ENSODEP00000005753

0.978

ENSODEP00000011519

0.978

Srsf7

0.978

ENSODEP00000022499

0.975

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000003095	ENSODEP00000005753	ENSODEP00000003095	ENSODEP00000005753	annotation not available	annotation not available	0.992
ENSODEP00000003095	ENSODEP00000011519	ENSODEP00000003095	ENSODEP00000011519	annotation not available	annotation not available	0.992
ENSODEP00000003095	ENSODEP00000015551	ENSODEP00000003095	ENSODEP00000015551	annotation not available	annotation not available	0.991
ENSODEP00000003095	ENSODEP00000022499	ENSODEP00000003095	ENSODEP00000022499	annotation not available	annotation not available	0.989
ENSODEP00000003095	SRSF9	ENSODEP00000003095	ENSODEP00000008127	annotation not available	Serine and arginine rich splicing factor 9.	0.964
ENSODEP00000003095	Srsf7	ENSODEP00000003095	ENSODEP00000013575	annotation not available	annotation not available	0.992
ENSODEP00000003095	TRA2A	ENSODEP00000003095	ENSODEP00000011205	annotation not available	Transformer 2 alpha homolog.	0.988
ENSODEP00000003095	TRA2B	ENSODEP00000003095	ENSODEP00000001728	annotation not available	Transformer 2 beta homolog.	0.979
ENSODEP00000004601	ENSODEP00000005753	ENSODEP00000004601	ENSODEP00000005753	annotation not available	annotation not available	0.992
ENSODEP00000004601	ENSODEP00000011519	ENSODEP00000004601	ENSODEP00000011519	annotation not available	annotation not available	0.992
ENSODEP00000004601	ENSODEP00000015551	ENSODEP00000004601	ENSODEP00000015551	annotation not available	annotation not available	0.991
ENSODEP00000004601	ENSODEP00000022499	ENSODEP00000004601	ENSODEP00000022499	annotation not available	annotation not available	0.989
ENSODEP00000004601	SRSF9	ENSODEP00000004601	ENSODEP00000008127	annotation not available	Serine and arginine rich splicing factor 9.	0.964
ENSODEP00000004601	Srsf7	ENSODEP00000004601	ENSODEP00000013575	annotation not available	annotation not available	0.992
ENSODEP00000004601	TRA2A	ENSODEP00000004601	ENSODEP00000011205	annotation not available	Transformer 2 alpha homolog.	0.988
ENSODEP00000004601	TRA2B	ENSODEP00000004601	ENSODEP00000001728	annotation not available	Transformer 2 beta homolog.	0.979
ENSODEP00000005753	ENSODEP00000003095	ENSODEP00000005753	ENSODEP00000003095	annotation not available	annotation not available	0.992
ENSODEP00000005753	ENSODEP00000004601	ENSODEP00000005753	ENSODEP00000004601	annotation not available	annotation not available	0.992
ENSODEP00000005753	ENSODEP00000013137	ENSODEP00000005753	ENSODEP00000013137	annotation not available	annotation not available	0.992
ENSODEP00000005753	ENSODEP00000015551	ENSODEP00000005753	ENSODEP00000015551	annotation not available	annotation not available	0.997