ENSODEP00000001731 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

ENSODEP00000001731

annotation not available (533 aa)

Predicted Functional Partners:

ENSODEP00000000200

0.954

ENSODEP00000012111

0.954

CDC5L

0.930

CDC40

0.918

DDX17

0.915

ENSODEP00000007816

0.888

ENSODEP00000008169

0.882

ENSODEP00000010023

0.882

MFAP1

0.882

ZMAT2

0.881

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC40	CDC5L	ENSODEP00000017615	ENSODEP00000023522	Cell division cycle 40.	Cell division cycle 5 like.	0.979
CDC40	DDX17	ENSODEP00000017615	ENSODEP00000017787	Cell division cycle 40.	DEAD-box helicase 17.	0.792
CDC40	ENSODEP00000000200	ENSODEP00000017615	ENSODEP00000000200	Cell division cycle 40.	annotation not available	0.736
CDC40	ENSODEP00000001731	ENSODEP00000017615	ENSODEP00000001731	Cell division cycle 40.	annotation not available	0.918
CDC40	ENSODEP00000007816	ENSODEP00000017615	ENSODEP00000007816	Cell division cycle 40.	annotation not available	0.989
CDC40	ENSODEP00000008169	ENSODEP00000017615	ENSODEP00000008169	Cell division cycle 40.	annotation not available	0.820
CDC40	ENSODEP00000010023	ENSODEP00000017615	ENSODEP00000010023	Cell division cycle 40.	annotation not available	0.820
CDC40	ENSODEP00000012111	ENSODEP00000017615	ENSODEP00000012111	Cell division cycle 40.	annotation not available	0.736
CDC40	MFAP1	ENSODEP00000017615	ENSODEP00000022337	Cell division cycle 40.	Microfibril associated protein 1.	0.987
CDC40	ZMAT2	ENSODEP00000017615	ENSODEP00000003183	Cell division cycle 40.	Zinc finger matrin-type 2.	0.977
CDC5L	CDC40	ENSODEP00000023522	ENSODEP00000017615	Cell division cycle 5 like.	Cell division cycle 40.	0.979
CDC5L	DDX17	ENSODEP00000023522	ENSODEP00000017787	Cell division cycle 5 like.	DEAD-box helicase 17.	0.560
CDC5L	ENSODEP00000000200	ENSODEP00000023522	ENSODEP00000000200	Cell division cycle 5 like.	annotation not available	0.767
CDC5L	ENSODEP00000001731	ENSODEP00000023522	ENSODEP00000001731	Cell division cycle 5 like.	annotation not available	0.930
CDC5L	ENSODEP00000007816	ENSODEP00000023522	ENSODEP00000007816	Cell division cycle 5 like.	annotation not available	0.934
CDC5L	ENSODEP00000008169	ENSODEP00000023522	ENSODEP00000008169	Cell division cycle 5 like.	annotation not available	0.582
CDC5L	ENSODEP00000010023	ENSODEP00000023522	ENSODEP00000010023	Cell division cycle 5 like.	annotation not available	0.582
CDC5L	ENSODEP00000012111	ENSODEP00000023522	ENSODEP00000012111	Cell division cycle 5 like.	annotation not available	0.767
CDC5L	MFAP1	ENSODEP00000023522	ENSODEP00000022337	Cell division cycle 5 like.	Microfibril associated protein 1.	0.948
CDC5L	ZMAT2	ENSODEP00000023522	ENSODEP00000003183	Cell division cycle 5 like.	Zinc finger matrin-type 2.	0.919