STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001740annotation not available (353 aa)    
Predicted Functional Partners:
ENSODEP00000003859
annotation not available
    
 0.948
IRF9
Interferon regulatory factor 9.
    
 0.948
RNF216
Ring finger protein 216.
    
 0.948
ARIH2
Ariadne RBR E3 ubiquitin protein ligase 2.
    
 0.948
ENSODEP00000006216
annotation not available
    
  0.880
ENSODEP00000012954
annotation not available
    
  0.880
Rps27a
annotation not available
    
  0.880
ENSODEP00000026236
annotation not available
    
  0.880
ENSODEP00000026645
annotation not available
    
  0.880
RNF144A
Ring finger protein 144A.
    
 0.830
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.