ENSODEP00000001740 protein (Octodon degus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

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co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ENSODEP00000001740

annotation not available (353 aa)

Predicted Functional Partners:

ENSODEP00000006216

0.799

ENSODEP00000012954

0.799

Rps27a

0.799

ENSODEP00000026236

0.799

ENSODEP00000026645

0.799

ENSODEP00000003859

0.798

IRF9

0.798

RNF216

0.798

ARIH2

0.798

TNF

0.745

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARIH2	ENSODEP00000001740	ENSODEP00000024998	ENSODEP00000001740	Ariadne RBR E3 ubiquitin protein ligase 2.	annotation not available	0.798
ARIH2	ENSODEP00000003859	ENSODEP00000024998	ENSODEP00000003859	Ariadne RBR E3 ubiquitin protein ligase 2.	annotation not available	0.426
ARIH2	ENSODEP00000006216	ENSODEP00000024998	ENSODEP00000006216	Ariadne RBR E3 ubiquitin protein ligase 2.	annotation not available	0.901
ARIH2	ENSODEP00000012954	ENSODEP00000024998	ENSODEP00000012954	Ariadne RBR E3 ubiquitin protein ligase 2.	annotation not available	0.901
ARIH2	ENSODEP00000026236	ENSODEP00000024998	ENSODEP00000026236	Ariadne RBR E3 ubiquitin protein ligase 2.	annotation not available	0.901
ARIH2	ENSODEP00000026645	ENSODEP00000024998	ENSODEP00000026645	Ariadne RBR E3 ubiquitin protein ligase 2.	annotation not available	0.901
ARIH2	RNF216	ENSODEP00000024998	ENSODEP00000019240	Ariadne RBR E3 ubiquitin protein ligase 2.	Ring finger protein 216.	0.440
ARIH2	Rps27a	ENSODEP00000024998	ENSODEP00000018046	Ariadne RBR E3 ubiquitin protein ligase 2.	annotation not available	0.901
ARIH2	TNF	ENSODEP00000024998	ENSODEP00000024408	Ariadne RBR E3 ubiquitin protein ligase 2.	Tumor necrosis factor.	0.856
ENSODEP00000001740	ARIH2	ENSODEP00000001740	ENSODEP00000024998	annotation not available	Ariadne RBR E3 ubiquitin protein ligase 2.	0.798
ENSODEP00000001740	ENSODEP00000003859	ENSODEP00000001740	ENSODEP00000003859	annotation not available	annotation not available	0.798
ENSODEP00000001740	ENSODEP00000006216	ENSODEP00000001740	ENSODEP00000006216	annotation not available	annotation not available	0.799
ENSODEP00000001740	ENSODEP00000012954	ENSODEP00000001740	ENSODEP00000012954	annotation not available	annotation not available	0.799
ENSODEP00000001740	ENSODEP00000026236	ENSODEP00000001740	ENSODEP00000026236	annotation not available	annotation not available	0.799
ENSODEP00000001740	ENSODEP00000026645	ENSODEP00000001740	ENSODEP00000026645	annotation not available	annotation not available	0.799
ENSODEP00000001740	IRF9	ENSODEP00000001740	ENSODEP00000003927	annotation not available	Interferon regulatory factor 9.	0.798
ENSODEP00000001740	RNF216	ENSODEP00000001740	ENSODEP00000019240	annotation not available	Ring finger protein 216.	0.798
ENSODEP00000001740	Rps27a	ENSODEP00000001740	ENSODEP00000018046	annotation not available	annotation not available	0.799
ENSODEP00000001740	TNF	ENSODEP00000001740	ENSODEP00000024408	annotation not available	Tumor necrosis factor.	0.745
ENSODEP00000003859	ARIH2	ENSODEP00000003859	ENSODEP00000024998	annotation not available	Ariadne RBR E3 ubiquitin protein ligase 2.	0.426