ENSODEP00000001744 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000001744

annotation not available (99 aa)

Predicted Functional Partners:

MYSM1

0.979

PBRM1

0.963

PHF10

0.957

ARID2

0.951

ENSODEP00000009046

0.934

ENSODEP00000024674

0.934

SRSF11

0.925

ARID1A

0.919

ARID1B

0.919

SMARCC2

0.905

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID1A	ARID1B	ENSODEP00000007566	ENSODEP00000011087	AT-rich interaction domain 1A.	AT-rich interaction domain 1B.	0.997
ARID1A	ARID2	ENSODEP00000007566	ENSODEP00000005255	AT-rich interaction domain 1A.	AT-rich interaction domain 2.	0.969
ARID1A	ENSODEP00000001744	ENSODEP00000007566	ENSODEP00000001744	AT-rich interaction domain 1A.	annotation not available	0.919
ARID1A	ENSODEP00000009046	ENSODEP00000007566	ENSODEP00000009046	AT-rich interaction domain 1A.	annotation not available	0.996
ARID1A	ENSODEP00000024674	ENSODEP00000007566	ENSODEP00000024674	AT-rich interaction domain 1A.	annotation not available	0.996
ARID1A	MYSM1	ENSODEP00000007566	ENSODEP00000015759	AT-rich interaction domain 1A.	Myb like, SWIRM and MPN domains 1.	0.992
ARID1A	PBRM1	ENSODEP00000007566	ENSODEP00000011106	AT-rich interaction domain 1A.	Polybromo 1.	0.989
ARID1A	PHF10	ENSODEP00000007566	ENSODEP00000012273	AT-rich interaction domain 1A.	PHD finger protein 10.	0.988
ARID1A	SMARCC2	ENSODEP00000007566	ENSODEP00000007147	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2.	0.998
ARID1B	ARID1A	ENSODEP00000011087	ENSODEP00000007566	AT-rich interaction domain 1B.	AT-rich interaction domain 1A.	0.997
ARID1B	ARID2	ENSODEP00000011087	ENSODEP00000005255	AT-rich interaction domain 1B.	AT-rich interaction domain 2.	0.970
ARID1B	ENSODEP00000001744	ENSODEP00000011087	ENSODEP00000001744	AT-rich interaction domain 1B.	annotation not available	0.919
ARID1B	ENSODEP00000009046	ENSODEP00000011087	ENSODEP00000009046	AT-rich interaction domain 1B.	annotation not available	0.994
ARID1B	ENSODEP00000024674	ENSODEP00000011087	ENSODEP00000024674	AT-rich interaction domain 1B.	annotation not available	0.994
ARID1B	MYSM1	ENSODEP00000011087	ENSODEP00000015759	AT-rich interaction domain 1B.	Myb like, SWIRM and MPN domains 1.	0.992
ARID1B	PBRM1	ENSODEP00000011087	ENSODEP00000011106	AT-rich interaction domain 1B.	Polybromo 1.	0.989
ARID1B	PHF10	ENSODEP00000011087	ENSODEP00000012273	AT-rich interaction domain 1B.	PHD finger protein 10.	0.977
ARID1B	SMARCC2	ENSODEP00000011087	ENSODEP00000007147	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2.	0.996
ARID2	ARID1A	ENSODEP00000005255	ENSODEP00000007566	AT-rich interaction domain 2.	AT-rich interaction domain 1A.	0.969
ARID2	ARID1B	ENSODEP00000005255	ENSODEP00000011087	AT-rich interaction domain 2.	AT-rich interaction domain 1B.	0.970