STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP15Ubiquitin specific peptidase 15. (981 aa)    
Predicted Functional Partners:
TGFBR1
Transforming growth factor beta receptor 1.
    
 0.981
SMAD3
SMAD family member 3.
    
 0.980
SMAD2
SMAD family member 2.
    
 0.980
SART3
Spliceosome associated factor 3, U4/U6 recycling protein.
    
 
 0.976
MFN1
Mitofusin 1.
   
 0.969
MFN2
Mitofusin 2.
   
 0.969
SMAD7
SMAD family member 7.
    
 0.968
RHOT1
Ras homolog family member T1.
    
 0.966
SMAD4
SMAD family member 4.
    
 0.965
TRAF6
TNF receptor associated factor 6.
    
 0.963
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.