STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001754annotation not available (326 aa)    
Predicted Functional Partners:
URM1
Ubiquitin related modifier 1.
    
 0.971
CTU2
Cytosolic thiouridylase subunit 2.
   
 0.960
MOCS3
Molybdenum cofactor synthesis 3.
  
 
 0.935
ELP3
Elongator acetyltransferase complex subunit 3.
   
 
 0.917
ELP5
Elongator acetyltransferase complex subunit 5.
   
 
 0.865
ELP1
Elongator complex protein 1.
   
 
 0.854
ENSODEP00000022762
annotation not available
    
 0.844
FTSJ3
FtsJ RNA 2'-O-methyltransferase 3.
  
  
 0.821
BAHCC1
BAH domain and coiled-coil containing 1.
   
   0.819
RBM34
RNA binding motif protein 34.
   
 
  0.812
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.