ENSODEP00000001760 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000001760

annotation not available (73 aa)

Predicted Functional Partners:

PICK1

0.883

RAB2B

0.684

Rab2a

0.682

ENSODEP00000005505

0.682

ENSODEP00000013502

0.682

ENSODEP00000022871

0.682

LCMT1

0.679

NELFA

0.654

PKP2

0.590

ENSODEP00000018376

0.586

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000001760	ENSODEP00000005505	ENSODEP00000001760	ENSODEP00000005505	annotation not available	annotation not available	0.682
ENSODEP00000001760	ENSODEP00000013502	ENSODEP00000001760	ENSODEP00000013502	annotation not available	annotation not available	0.682
ENSODEP00000001760	ENSODEP00000018376	ENSODEP00000001760	ENSODEP00000018376	annotation not available	annotation not available	0.586
ENSODEP00000001760	ENSODEP00000022871	ENSODEP00000001760	ENSODEP00000022871	annotation not available	annotation not available	0.682
ENSODEP00000001760	LCMT1	ENSODEP00000001760	ENSODEP00000019461	annotation not available	Leucine carboxyl methyltransferase 1.	0.679
ENSODEP00000001760	NELFA	ENSODEP00000001760	ENSODEP00000015071	annotation not available	Negative elongation factor complex member A.	0.654
ENSODEP00000001760	PICK1	ENSODEP00000001760	ENSODEP00000016099	annotation not available	Protein interacting with PRKCA 1.	0.883
ENSODEP00000001760	PKP2	ENSODEP00000001760	ENSODEP00000006567	annotation not available	Plakophilin 2.	0.590
ENSODEP00000001760	RAB2B	ENSODEP00000001760	ENSODEP00000001698	annotation not available	RAB2B, member RAS oncogene family.	0.684
ENSODEP00000001760	Rab2a	ENSODEP00000001760	ENSODEP00000003088	annotation not available	annotation not available	0.682
ENSODEP00000005505	ENSODEP00000001760	ENSODEP00000005505	ENSODEP00000001760	annotation not available	annotation not available	0.682
ENSODEP00000005505	RAB2B	ENSODEP00000005505	ENSODEP00000001698	annotation not available	RAB2B, member RAS oncogene family.	0.969
ENSODEP00000013502	ENSODEP00000001760	ENSODEP00000013502	ENSODEP00000001760	annotation not available	annotation not available	0.682
ENSODEP00000013502	RAB2B	ENSODEP00000013502	ENSODEP00000001698	annotation not available	RAB2B, member RAS oncogene family.	0.969
ENSODEP00000018376	ENSODEP00000001760	ENSODEP00000018376	ENSODEP00000001760	annotation not available	annotation not available	0.586
ENSODEP00000018376	PKP2	ENSODEP00000018376	ENSODEP00000006567	annotation not available	Plakophilin 2.	0.440
ENSODEP00000022871	ENSODEP00000001760	ENSODEP00000022871	ENSODEP00000001760	annotation not available	annotation not available	0.682
ENSODEP00000022871	RAB2B	ENSODEP00000022871	ENSODEP00000001698	annotation not available	RAB2B, member RAS oncogene family.	0.969
LCMT1	ENSODEP00000001760	ENSODEP00000019461	ENSODEP00000001760	Leucine carboxyl methyltransferase 1.	annotation not available	0.679
NELFA	ENSODEP00000001760	ENSODEP00000015071	ENSODEP00000001760	Negative elongation factor complex member A.	annotation not available	0.654