Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TOX4TOX high mobility group box family member 4. (619 aa)    
Predicted Functional Partners:
WDR82
WD repeat domain 82.
    
 0.967
ENSODEP00000012875
annotation not available
    
 
 0.957
PPP1R10
Protein phosphatase 1 regulatory subunit 10.
    
 0.950
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.876
TOX3
TOX high mobility group box family member 3.
   
  
 0.860
ACTR8
Actin related protein 8.
    
 0.841
ACTR5
Actin related protein 5.
    
 0.835
RUVBL1
RuvB like AAA ATPase 1.
    
 0.828
USP4
Ubiquitin specific peptidase 4.
   
 
 0.806
TOX2
TOX high mobility group box family member 2.
   
 
 0.791
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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