ENSODEP00000001772 protein (Octodon degus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ENSODEP00000001772

annotation not available (47 aa)

Predicted Functional Partners:

ENSODEP00000002311

0.974

ENSODEP00000025656

0.974

PPP4C

0.957

ENSODEP00000003204

0.941

ENSODEP00000004977

0.941

ENSODEP00000008140

0.871

ENSODEP00000010027

0.871

ENSODEP00000022920

0.871

TRIP12

0.870

LDHD

0.786

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000001772	ENSODEP00000002311	ENSODEP00000001772	ENSODEP00000002311	annotation not available	annotation not available	0.974
ENSODEP00000001772	ENSODEP00000003204	ENSODEP00000001772	ENSODEP00000003204	annotation not available	annotation not available	0.941
ENSODEP00000001772	ENSODEP00000004977	ENSODEP00000001772	ENSODEP00000004977	annotation not available	annotation not available	0.941
ENSODEP00000001772	ENSODEP00000008140	ENSODEP00000001772	ENSODEP00000008140	annotation not available	annotation not available	0.871
ENSODEP00000001772	ENSODEP00000010027	ENSODEP00000001772	ENSODEP00000010027	annotation not available	annotation not available	0.871
ENSODEP00000001772	ENSODEP00000022920	ENSODEP00000001772	ENSODEP00000022920	annotation not available	annotation not available	0.871
ENSODEP00000001772	ENSODEP00000025656	ENSODEP00000001772	ENSODEP00000025656	annotation not available	annotation not available	0.974
ENSODEP00000001772	LDHD	ENSODEP00000001772	ENSODEP00000018187	annotation not available	Lactate dehydrogenase D.	0.786
ENSODEP00000001772	PPP4C	ENSODEP00000001772	ENSODEP00000018358	annotation not available	Protein phosphatase 4 catalytic subunit.	0.957
ENSODEP00000001772	TRIP12	ENSODEP00000001772	ENSODEP00000012263	annotation not available	Thyroid hormone receptor interactor 12.	0.870
ENSODEP00000002311	ENSODEP00000001772	ENSODEP00000002311	ENSODEP00000001772	annotation not available	annotation not available	0.974
ENSODEP00000002311	ENSODEP00000003204	ENSODEP00000002311	ENSODEP00000003204	annotation not available	annotation not available	0.951
ENSODEP00000002311	ENSODEP00000004977	ENSODEP00000002311	ENSODEP00000004977	annotation not available	annotation not available	0.951
ENSODEP00000002311	ENSODEP00000008140	ENSODEP00000002311	ENSODEP00000008140	annotation not available	annotation not available	0.584
ENSODEP00000002311	ENSODEP00000010027	ENSODEP00000002311	ENSODEP00000010027	annotation not available	annotation not available	0.584
ENSODEP00000002311	ENSODEP00000022920	ENSODEP00000002311	ENSODEP00000022920	annotation not available	annotation not available	0.584
ENSODEP00000002311	PPP4C	ENSODEP00000002311	ENSODEP00000018358	annotation not available	Protein phosphatase 4 catalytic subunit.	0.992
ENSODEP00000003204	ENSODEP00000001772	ENSODEP00000003204	ENSODEP00000001772	annotation not available	annotation not available	0.941
ENSODEP00000003204	ENSODEP00000002311	ENSODEP00000003204	ENSODEP00000002311	annotation not available	annotation not available	0.951
ENSODEP00000003204	ENSODEP00000008140	ENSODEP00000003204	ENSODEP00000008140	annotation not available	annotation not available	0.699