SPACA6 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

SPACA6

Sperm acrosome associated 6. (338 aa)

Predicted Functional Partners:

SNRPF

0.973

SNRPG

0.960

ENSODEP00000010819

0.941

ENSODEP00000025997

0.941

ENSODEP00000026701

0.941

SNRPD1

0.923

LSM10

0.923

SF3B2

0.916

SF3A1

0.913

DDX46

0.912

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX46	ENSODEP00000010819	ENSODEP00000013565	ENSODEP00000010819	DEAD-box helicase 46.	annotation not available	0.925
DDX46	ENSODEP00000025997	ENSODEP00000013565	ENSODEP00000025997	DEAD-box helicase 46.	annotation not available	0.925
DDX46	ENSODEP00000026701	ENSODEP00000013565	ENSODEP00000026701	DEAD-box helicase 46.	annotation not available	0.925
DDX46	LSM10	ENSODEP00000013565	ENSODEP00000025836	DEAD-box helicase 46.	LSM10, U7 small nuclear RNA associated.	0.942
DDX46	SF3A1	ENSODEP00000013565	ENSODEP00000003338	DEAD-box helicase 46.	Splicing factor 3a subunit 1.	0.990
DDX46	SF3B2	ENSODEP00000013565	ENSODEP00000024278	DEAD-box helicase 46.	Splicing factor 3b subunit 2.	0.991
DDX46	SNRPD1	ENSODEP00000013565	ENSODEP00000007732	DEAD-box helicase 46.	Small nuclear ribonucleoprotein Sm D1.	0.976
DDX46	SNRPF	ENSODEP00000013565	ENSODEP00000013976	DEAD-box helicase 46.	Small nuclear ribonucleoprotein polypeptide F.	0.969
DDX46	SNRPG	ENSODEP00000013565	ENSODEP00000015162	DEAD-box helicase 46.	Small nuclear ribonucleoprotein G.	0.943
DDX46	SPACA6	ENSODEP00000013565	ENSODEP00000001780	DEAD-box helicase 46.	Sperm acrosome associated 6.	0.912
ENSODEP00000010819	DDX46	ENSODEP00000010819	ENSODEP00000013565	annotation not available	DEAD-box helicase 46.	0.925
ENSODEP00000010819	LSM10	ENSODEP00000010819	ENSODEP00000025836	annotation not available	LSM10, U7 small nuclear RNA associated.	0.989
ENSODEP00000010819	SF3A1	ENSODEP00000010819	ENSODEP00000003338	annotation not available	Splicing factor 3a subunit 1.	0.931
ENSODEP00000010819	SF3B2	ENSODEP00000010819	ENSODEP00000024278	annotation not available	Splicing factor 3b subunit 2.	0.951
ENSODEP00000010819	SNRPD1	ENSODEP00000010819	ENSODEP00000007732	annotation not available	Small nuclear ribonucleoprotein Sm D1.	0.998
ENSODEP00000010819	SNRPF	ENSODEP00000010819	ENSODEP00000013976	annotation not available	Small nuclear ribonucleoprotein polypeptide F.	0.998
ENSODEP00000010819	SNRPG	ENSODEP00000010819	ENSODEP00000015162	annotation not available	Small nuclear ribonucleoprotein G.	0.998
ENSODEP00000010819	SPACA6	ENSODEP00000010819	ENSODEP00000001780	annotation not available	Sperm acrosome associated 6.	0.941
ENSODEP00000025997	DDX46	ENSODEP00000025997	ENSODEP00000013565	annotation not available	DEAD-box helicase 46.	0.925
ENSODEP00000025997	LSM10	ENSODEP00000025997	ENSODEP00000025836	annotation not available	LSM10, U7 small nuclear RNA associated.	0.989