STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001781annotation not available (100 aa)    
Predicted Functional Partners:
VAMP1
Vesicle associated membrane protein 1.
   
 0.998
ENSODEP00000024482
annotation not available
   
 0.998
STX3
Syntaxin 3.
    
 0.995
STX4
Syntaxin 4.
    
 0.995
STX6
Syntaxin 6.
    
 0.992
STX1B
Syntaxin 1B.
    
 0.990
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.988
STX1A
Syntaxin 1A.
    
 0.988
STX2
Syntaxin 2.
    
 0.984
STX16
Syntaxin 16.
    
 0.982
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.