RCVRN protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RCVRN

Recoverin. (202 aa)

Predicted Functional Partners:

GRK1

0.998

GRK7

0.993

RHO

0.989

Grk6

0.969

GRK4

0.969

ENSODEP00000019531

0.969

DNAH8

0.969

GRK5

0.969

DHRS7C

0.958

CNGA3

0.953

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNGA3	ENSODEP00000019531	ENSODEP00000011190	ENSODEP00000019531	Cyclic nucleotide gated channel subunit alpha 3.	annotation not available	0.525
CNGA3	GRK1	ENSODEP00000011190	ENSODEP00000010253	Cyclic nucleotide gated channel subunit alpha 3.	G protein-coupled receptor kinase 1.	0.714
CNGA3	GRK4	ENSODEP00000011190	ENSODEP00000016490	Cyclic nucleotide gated channel subunit alpha 3.	G protein-coupled receptor kinase 4.	0.525
CNGA3	GRK5	ENSODEP00000011190	ENSODEP00000024274	Cyclic nucleotide gated channel subunit alpha 3.	G protein-coupled receptor kinase 5.	0.525
CNGA3	GRK7	ENSODEP00000011190	ENSODEP00000012703	Cyclic nucleotide gated channel subunit alpha 3.	G protein-coupled receptor kinase 7.	0.647
CNGA3	Grk6	ENSODEP00000011190	ENSODEP00000010333	Cyclic nucleotide gated channel subunit alpha 3.	annotation not available	0.525
CNGA3	RCVRN	ENSODEP00000011190	ENSODEP00000001792	Cyclic nucleotide gated channel subunit alpha 3.	Recoverin.	0.953
CNGA3	RHO	ENSODEP00000011190	ENSODEP00000004330	Cyclic nucleotide gated channel subunit alpha 3.	Rhodopsin.	0.798
DHRS7C	DNAH8	ENSODEP00000001645	ENSODEP00000022850	Dehydrogenase/reductase 7C.	Dynein axonemal heavy chain 8.	0.940
DHRS7C	RCVRN	ENSODEP00000001645	ENSODEP00000001792	Dehydrogenase/reductase 7C.	Recoverin.	0.958
DNAH8	DHRS7C	ENSODEP00000022850	ENSODEP00000001645	Dynein axonemal heavy chain 8.	Dehydrogenase/reductase 7C.	0.940
DNAH8	RCVRN	ENSODEP00000022850	ENSODEP00000001792	Dynein axonemal heavy chain 8.	Recoverin.	0.969
ENSODEP00000019531	CNGA3	ENSODEP00000019531	ENSODEP00000011190	annotation not available	Cyclic nucleotide gated channel subunit alpha 3.	0.525
ENSODEP00000019531	GRK1	ENSODEP00000019531	ENSODEP00000010253	annotation not available	G protein-coupled receptor kinase 1.	0.811
ENSODEP00000019531	GRK4	ENSODEP00000019531	ENSODEP00000016490	annotation not available	G protein-coupled receptor kinase 4.	0.876
ENSODEP00000019531	GRK5	ENSODEP00000019531	ENSODEP00000024274	annotation not available	G protein-coupled receptor kinase 5.	0.790
ENSODEP00000019531	GRK7	ENSODEP00000019531	ENSODEP00000012703	annotation not available	G protein-coupled receptor kinase 7.	0.936
ENSODEP00000019531	RCVRN	ENSODEP00000019531	ENSODEP00000001792	annotation not available	Recoverin.	0.969
ENSODEP00000019531	RHO	ENSODEP00000019531	ENSODEP00000004330	annotation not available	Rhodopsin.	0.972
GRK1	CNGA3	ENSODEP00000010253	ENSODEP00000011190	G protein-coupled receptor kinase 1.	Cyclic nucleotide gated channel subunit alpha 3.	0.714