STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDE4DIPPhosphodiesterase 4D interacting protein. (2393 aa)    
Predicted Functional Partners:
TUBGCP2
Tubulin gamma complex associated protein 2.
    
 0.918
ESPL1
Extra spindle pole bodies like 1, separase.
    
 0.863
TUBGCP3
Tubulin gamma complex associated protein 3.
    
 0.858
ENSODEP00000024666
annotation not available
    
 0.822
TUBG2
Tubulin gamma 2.
    
 
 0.818
TUBG1
Tubulin gamma 1.
    
 
 0.818
CKAP5
Cytoskeleton associated protein 5.
    
 0.798
LARS1
leucyl-tRNA synthetase 1.
    
   0.787
ENSODEP00000005403
annotation not available
    
 
 0.783
PPP2R2B
Protein phosphatase 2 regulatory subunit Bbeta.
    
 0.776
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.