PDE4DIP protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PDE4DIP

Phosphodiesterase 4D interacting protein. (2393 aa)

Predicted Functional Partners:

TUBGCP2

0.966

TUBGCP6

0.939

TUBG2

0.936

TUBG1

0.936

TUBGCP5

0.930

PDE4D

0.923

ENSODEP00000000083

0.902

ENSODEP00000000175

0.902

ENSODEP00000009157

0.902

ENSODEP00000025311

0.902

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000000083	PDE4DIP	ENSODEP00000000083	ENSODEP00000001800	annotation not available	Phosphodiesterase 4D interacting protein.	0.902
ENSODEP00000000083	TUBG1	ENSODEP00000000083	ENSODEP00000024620	annotation not available	Tubulin gamma 1.	0.978
ENSODEP00000000083	TUBG2	ENSODEP00000000083	ENSODEP00000024594	annotation not available	Tubulin gamma 2.	0.978
ENSODEP00000000083	TUBGCP2	ENSODEP00000000083	ENSODEP00000022886	annotation not available	Tubulin gamma complex associated protein 2.	0.991
ENSODEP00000000083	TUBGCP5	ENSODEP00000000083	ENSODEP00000004465	annotation not available	Tubulin gamma complex associated protein 5.	0.991
ENSODEP00000000083	TUBGCP6	ENSODEP00000000083	ENSODEP00000021527	annotation not available	Tubulin gamma complex associated protein 6.	0.991
ENSODEP00000000175	PDE4DIP	ENSODEP00000000175	ENSODEP00000001800	annotation not available	Phosphodiesterase 4D interacting protein.	0.902
ENSODEP00000000175	TUBG1	ENSODEP00000000175	ENSODEP00000024620	annotation not available	Tubulin gamma 1.	0.978
ENSODEP00000000175	TUBG2	ENSODEP00000000175	ENSODEP00000024594	annotation not available	Tubulin gamma 2.	0.978
ENSODEP00000000175	TUBGCP2	ENSODEP00000000175	ENSODEP00000022886	annotation not available	Tubulin gamma complex associated protein 2.	0.991
ENSODEP00000000175	TUBGCP5	ENSODEP00000000175	ENSODEP00000004465	annotation not available	Tubulin gamma complex associated protein 5.	0.991
ENSODEP00000000175	TUBGCP6	ENSODEP00000000175	ENSODEP00000021527	annotation not available	Tubulin gamma complex associated protein 6.	0.991
ENSODEP00000009157	PDE4DIP	ENSODEP00000009157	ENSODEP00000001800	annotation not available	Phosphodiesterase 4D interacting protein.	0.902
ENSODEP00000009157	TUBG1	ENSODEP00000009157	ENSODEP00000024620	annotation not available	Tubulin gamma 1.	0.978
ENSODEP00000009157	TUBG2	ENSODEP00000009157	ENSODEP00000024594	annotation not available	Tubulin gamma 2.	0.978
ENSODEP00000009157	TUBGCP2	ENSODEP00000009157	ENSODEP00000022886	annotation not available	Tubulin gamma complex associated protein 2.	0.991
ENSODEP00000009157	TUBGCP5	ENSODEP00000009157	ENSODEP00000004465	annotation not available	Tubulin gamma complex associated protein 5.	0.991
ENSODEP00000009157	TUBGCP6	ENSODEP00000009157	ENSODEP00000021527	annotation not available	Tubulin gamma complex associated protein 6.	0.991
ENSODEP00000025311	PDE4DIP	ENSODEP00000025311	ENSODEP00000001800	annotation not available	Phosphodiesterase 4D interacting protein.	0.902
ENSODEP00000025311	TUBG1	ENSODEP00000025311	ENSODEP00000024620	annotation not available	Tubulin gamma 1.	0.978