ENSODEP00000001810 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000001810

annotation not available (530 aa)

Predicted Functional Partners:

ATP6V0B

0.942

INTS1

0.939

INTS7

0.927

INTS13

0.923

INTS3

0.922

ATP6V1H

0.918

ALDH6A1

0.918

INTS4

0.911

HIBCH

0.911

INTS11

0.909

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALDH6A1	ENSODEP00000001810	ENSODEP00000021474	ENSODEP00000001810	Aldehyde dehydrogenase 6 family member A1.	annotation not available	0.918
ALDH6A1	HIBCH	ENSODEP00000021474	ENSODEP00000014440	Aldehyde dehydrogenase 6 family member A1.	3-hydroxyisobutyryl-CoA hydrolase.	0.951
ATP6V0B	ATP6V1H	ENSODEP00000003651	ENSODEP00000003706	ATPase H+ transporting V0 subunit b.	ATPase H+ transporting V1 subunit H.	0.998
ATP6V0B	ENSODEP00000001810	ENSODEP00000003651	ENSODEP00000001810	ATPase H+ transporting V0 subunit b.	annotation not available	0.942
ATP6V1H	ATP6V0B	ENSODEP00000003706	ENSODEP00000003651	ATPase H+ transporting V1 subunit H.	ATPase H+ transporting V0 subunit b.	0.998
ATP6V1H	ENSODEP00000001810	ENSODEP00000003706	ENSODEP00000001810	ATPase H+ transporting V1 subunit H.	annotation not available	0.918
ENSODEP00000001810	ALDH6A1	ENSODEP00000001810	ENSODEP00000021474	annotation not available	Aldehyde dehydrogenase 6 family member A1.	0.918
ENSODEP00000001810	ATP6V0B	ENSODEP00000001810	ENSODEP00000003651	annotation not available	ATPase H+ transporting V0 subunit b.	0.942
ENSODEP00000001810	ATP6V1H	ENSODEP00000001810	ENSODEP00000003706	annotation not available	ATPase H+ transporting V1 subunit H.	0.918
ENSODEP00000001810	HIBCH	ENSODEP00000001810	ENSODEP00000014440	annotation not available	3-hydroxyisobutyryl-CoA hydrolase.	0.911
ENSODEP00000001810	INTS1	ENSODEP00000001810	ENSODEP00000015193	annotation not available	Integrator complex subunit 1.	0.939
ENSODEP00000001810	INTS11	ENSODEP00000001810	ENSODEP00000013183	annotation not available	Integrator complex subunit 11.	0.909
ENSODEP00000001810	INTS13	ENSODEP00000001810	ENSODEP00000014347	annotation not available	Integrator complex subunit 13.	0.923
ENSODEP00000001810	INTS3	ENSODEP00000001810	ENSODEP00000017079	annotation not available	Integrator complex subunit 3.	0.922
ENSODEP00000001810	INTS4	ENSODEP00000001810	ENSODEP00000006062	annotation not available	Integrator complex subunit 4.	0.911
ENSODEP00000001810	INTS7	ENSODEP00000001810	ENSODEP00000018734	annotation not available	Integrator complex subunit 7.	0.927
HIBCH	ALDH6A1	ENSODEP00000014440	ENSODEP00000021474	3-hydroxyisobutyryl-CoA hydrolase.	Aldehyde dehydrogenase 6 family member A1.	0.951
HIBCH	ENSODEP00000001810	ENSODEP00000014440	ENSODEP00000001810	3-hydroxyisobutyryl-CoA hydrolase.	annotation not available	0.911
INTS1	ENSODEP00000001810	ENSODEP00000015193	ENSODEP00000001810	Integrator complex subunit 1.	annotation not available	0.939
INTS1	INTS11	ENSODEP00000015193	ENSODEP00000013183	Integrator complex subunit 1.	Integrator complex subunit 11.	0.999