STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STAC3SH3 and cysteine rich domain 3. (364 aa)    
Predicted Functional Partners:
CACNA1S
Calcium voltage-gated channel subunit alpha1 S.
   
 
 0.891
RYR1
Ryanodine receptor 1.
   
  
 0.847
MAB21L3
Mab-21 like 3.
   
   0.834
PPARA
Peroxisome proliferator activated receptor alpha.
    
 
 0.764
CACNB1
Calcium voltage-gated channel auxiliary subunit beta 1.
   
 
 0.731
UPF1
UPF1 RNA helicase and ATPase.
    
 
 0.729
POLR3B
RNA polymerase III subunit B.
    
 
 0.729
WDR54
WD repeat domain 54.
    
   0.716
ANKLE2
Ankyrin repeat and LEM domain containing 2.
    
   0.690
ENSODEP00000013975
annotation not available
    
 
 0.673
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.