STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC39Coiled-coil domain containing 39. (670 aa)    
Predicted Functional Partners:
CCDC40
Coiled-coil domain containing 40.
   
 
 0.966
DNAI2
Dynein axonemal intermediate chain 2.
    
 0.962
DNAI1
Dynein axonemal intermediate chain 1.
   
 0.955
CCDC65
Coiled-coil domain containing 65.
   
 
 0.954
DNALI1
Dynein axonemal light intermediate chain 1.
   
 
 0.954
DRC1
Dynein regulatory complex subunit 1.
   
 
 0.950
ARMC4
Armadillo repeat containing 4.
   
 
 0.947
RSPH1
Radial spoke head component 1.
   
 
 0.945
CCDC151
Coiled-coil domain containing 151.
    
 0.945
RSPH9
Radial spoke head component 9.
   
 
 0.938
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.