STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTC9BTetratricopeptide repeat domain 9B. (235 aa)    
Predicted Functional Partners:
ENSODEP00000024666
annotation not available
    
 0.904
MICU3
Mitochondrial calcium uptake family member 3.
    
   0.872
ENSODEP00000000761
annotation not available
   
 0.745
STIP1
Stress induced phosphoprotein 1.
   
 0.745
TTC28
Tetratricopeptide repeat domain 28.
   
 0.745
PRKN
Parkin RBR E3 ubiquitin protein ligase.
    
 0.739
COQ9
Coenzyme Q9.
  
 
 0.710
IRGQ
Immunity related GTPase Q.
    
 
 0.704
ENSODEP00000024701
annotation not available
   
 0.687
ENSODEP00000000039
annotation not available
   
 0.684
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.