STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATP13A3ATPase 13A3. (1255 aa)    
Predicted Functional Partners:
ATP7B
ATPase copper transporting beta.
   
 0.815
ENSODEP00000014537
annotation not available
    
 
 0.815
ATP7A
ATPase copper transporting alpha.
   
 0.792
PAFAH2
Platelet activating factor acetylhydrolase 2.
     
 0.760
GDF2
Growth differentiation factor 2.
      
 0.757
ENSODEP00000016752
annotation not available
   
 
 0.739
ENSODEP00000005213
annotation not available
    
 0.737
ENSODEP00000006205
annotation not available
    
 0.737
ENSODEP00000008920
annotation not available
    
 0.737
ENSODEP00000015555
annotation not available
    
 0.737
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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