STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUS7Pseudouridine synthase 7. (663 aa)    
Predicted Functional Partners:
NOC3L
NOC3 like DNA replication regulator.
   
   0.969
METTL1
Methyltransferase like 1.
  
 
 0.951
WDR4
WD repeat domain 4.
   
 
 0.948
PUS3
Pseudouridine synthase 3.
  
 
 0.901
NSUN2
NOP2/Sun RNA methyltransferase 2.
  
 
 0.881
MRPS5
Mitochondrial ribosomal protein S5.
   
   0.875
RPUSD2
RNA pseudouridine synthase domain containing 2.
  
 
 0.870
ENSODEP00000002012
annotation not available
   
 
 0.865
THUMPD1
THUMP domain containing 1.
   
 
 0.862
RPUSD4
RNA pseudouridine synthase D4.
   
 
 0.860
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.