SFT2D2 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFT2D2

SFT2 domain containing 2. (160 aa)

Predicted Functional Partners:

STX5

0.855

ENSODEP00000000079

0.841

ENSODEP00000007386

0.841

ENSODEP00000015229

0.841

ENSODEP00000016954

0.841

ENSODEP00000019140

0.841

STX16

0.824

GOLT1A

0.814

COG6

0.812

ENSODEP00000003125

0.809

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COG6	ENSODEP00000007386	ENSODEP00000005103	ENSODEP00000007386	Component of oligomeric golgi complex 6.	annotation not available	0.839
COG6	ENSODEP00000019140	ENSODEP00000005103	ENSODEP00000019140	Component of oligomeric golgi complex 6.	annotation not available	0.839
COG6	GOLT1A	ENSODEP00000005103	ENSODEP00000017885	Component of oligomeric golgi complex 6.	Golgi transport 1A.	0.778
COG6	SFT2D2	ENSODEP00000005103	ENSODEP00000001832	Component of oligomeric golgi complex 6.	SFT2 domain containing 2.	0.812
COG6	STX16	ENSODEP00000005103	ENSODEP00000000445	Component of oligomeric golgi complex 6.	Syntaxin 16.	0.983
COG6	STX5	ENSODEP00000005103	ENSODEP00000004149	Component of oligomeric golgi complex 6.	Syntaxin 5.	0.968
ENSODEP00000000079	SFT2D2	ENSODEP00000000079	ENSODEP00000001832	annotation not available	SFT2 domain containing 2.	0.841
ENSODEP00000003125	SFT2D2	ENSODEP00000003125	ENSODEP00000001832	annotation not available	SFT2 domain containing 2.	0.809
ENSODEP00000007386	COG6	ENSODEP00000007386	ENSODEP00000005103	annotation not available	Component of oligomeric golgi complex 6.	0.839
ENSODEP00000007386	SFT2D2	ENSODEP00000007386	ENSODEP00000001832	annotation not available	SFT2 domain containing 2.	0.841
ENSODEP00000007386	STX16	ENSODEP00000007386	ENSODEP00000000445	annotation not available	Syntaxin 16.	0.933
ENSODEP00000007386	STX5	ENSODEP00000007386	ENSODEP00000004149	annotation not available	Syntaxin 5.	0.993
ENSODEP00000015229	SFT2D2	ENSODEP00000015229	ENSODEP00000001832	annotation not available	SFT2 domain containing 2.	0.841
ENSODEP00000016954	SFT2D2	ENSODEP00000016954	ENSODEP00000001832	annotation not available	SFT2 domain containing 2.	0.841
ENSODEP00000019140	COG6	ENSODEP00000019140	ENSODEP00000005103	annotation not available	Component of oligomeric golgi complex 6.	0.839
ENSODEP00000019140	SFT2D2	ENSODEP00000019140	ENSODEP00000001832	annotation not available	SFT2 domain containing 2.	0.841
ENSODEP00000019140	STX16	ENSODEP00000019140	ENSODEP00000000445	annotation not available	Syntaxin 16.	0.933
ENSODEP00000019140	STX5	ENSODEP00000019140	ENSODEP00000004149	annotation not available	Syntaxin 5.	0.993
GOLT1A	COG6	ENSODEP00000017885	ENSODEP00000005103	Golgi transport 1A.	Component of oligomeric golgi complex 6.	0.778
GOLT1A	SFT2D2	ENSODEP00000017885	ENSODEP00000001832	Golgi transport 1A.	SFT2 domain containing 2.	0.814