ENSODEP00000001845 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000001845

annotation not available (246 aa)

Predicted Functional Partners:

ENSODEP00000008645

0.863

ENSODEP00000021856

0.863

ENSODEP00000022499

0.863

ENSODEP00000007344

0.847

ASF1B

0.847

ENSODEP00000014767

0.847

ENSODEP00000018086

0.808

ENSODEP00000018741

0.808

ENSODEP00000020684

0.808

ENSODEP00000020799

0.808

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASF1B	ENSODEP00000001845	ENSODEP00000012791	ENSODEP00000001845	Anti-silencing function 1B histone chaperone.	annotation not available	0.847
ASF1B	ENSODEP00000007344	ENSODEP00000012791	ENSODEP00000007344	Anti-silencing function 1B histone chaperone.	annotation not available	0.846
ASF1B	ENSODEP00000014767	ENSODEP00000012791	ENSODEP00000014767	Anti-silencing function 1B histone chaperone.	annotation not available	0.847
ASF1B	ENSODEP00000018086	ENSODEP00000012791	ENSODEP00000018086	Anti-silencing function 1B histone chaperone.	annotation not available	0.887
ASF1B	ENSODEP00000018741	ENSODEP00000012791	ENSODEP00000018741	Anti-silencing function 1B histone chaperone.	annotation not available	0.887
ASF1B	ENSODEP00000020684	ENSODEP00000012791	ENSODEP00000020684	Anti-silencing function 1B histone chaperone.	annotation not available	0.887
ASF1B	ENSODEP00000020799	ENSODEP00000012791	ENSODEP00000020799	Anti-silencing function 1B histone chaperone.	annotation not available	0.887
ENSODEP00000001845	ASF1B	ENSODEP00000001845	ENSODEP00000012791	annotation not available	Anti-silencing function 1B histone chaperone.	0.847
ENSODEP00000001845	ENSODEP00000007344	ENSODEP00000001845	ENSODEP00000007344	annotation not available	annotation not available	0.847
ENSODEP00000001845	ENSODEP00000008645	ENSODEP00000001845	ENSODEP00000008645	annotation not available	annotation not available	0.863
ENSODEP00000001845	ENSODEP00000014767	ENSODEP00000001845	ENSODEP00000014767	annotation not available	annotation not available	0.847
ENSODEP00000001845	ENSODEP00000018086	ENSODEP00000001845	ENSODEP00000018086	annotation not available	annotation not available	0.808
ENSODEP00000001845	ENSODEP00000018741	ENSODEP00000001845	ENSODEP00000018741	annotation not available	annotation not available	0.808
ENSODEP00000001845	ENSODEP00000020684	ENSODEP00000001845	ENSODEP00000020684	annotation not available	annotation not available	0.808
ENSODEP00000001845	ENSODEP00000020799	ENSODEP00000001845	ENSODEP00000020799	annotation not available	annotation not available	0.808
ENSODEP00000001845	ENSODEP00000021856	ENSODEP00000001845	ENSODEP00000021856	annotation not available	annotation not available	0.863
ENSODEP00000001845	ENSODEP00000022499	ENSODEP00000001845	ENSODEP00000022499	annotation not available	annotation not available	0.863
ENSODEP00000007344	ASF1B	ENSODEP00000007344	ENSODEP00000012791	annotation not available	Anti-silencing function 1B histone chaperone.	0.846
ENSODEP00000007344	ENSODEP00000001845	ENSODEP00000007344	ENSODEP00000001845	annotation not available	annotation not available	0.847
ENSODEP00000007344	ENSODEP00000018086	ENSODEP00000007344	ENSODEP00000018086	annotation not available	annotation not available	0.887