ENSODEP00000001846 protein (Octodon degus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

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[Homology]

Score

ENSODEP00000001846

annotation not available (665 aa)

Predicted Functional Partners:

PES1

0.985

ENSODEP00000007616

0.983

NOP53

0.981

NOC2L

0.978

RSL24D1

0.976

NLE1

0.976

ENSODEP00000008366

0.974

ENSODEP00000002012

0.968

WDR18

0.968

ZNF593

0.964

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000001846	ENSODEP00000002012	ENSODEP00000001846	ENSODEP00000002012	annotation not available	annotation not available	0.968
ENSODEP00000001846	ENSODEP00000007616	ENSODEP00000001846	ENSODEP00000007616	annotation not available	annotation not available	0.983
ENSODEP00000001846	ENSODEP00000008366	ENSODEP00000001846	ENSODEP00000008366	annotation not available	annotation not available	0.974
ENSODEP00000001846	NLE1	ENSODEP00000001846	ENSODEP00000020543	annotation not available	Notchless homolog 1.	0.976
ENSODEP00000001846	NOC2L	ENSODEP00000001846	ENSODEP00000012820	annotation not available	NOC2 like nucleolar associated transcriptional repressor.	0.978
ENSODEP00000001846	NOP53	ENSODEP00000001846	ENSODEP00000008981	annotation not available	NOP53 ribosome biogenesis factor.	0.981
ENSODEP00000001846	PES1	ENSODEP00000001846	ENSODEP00000004180	annotation not available	Pescadillo ribosomal biogenesis factor 1.	0.985
ENSODEP00000001846	RSL24D1	ENSODEP00000001846	ENSODEP00000007273	annotation not available	Ribosomal L24 domain containing 1.	0.976
ENSODEP00000001846	WDR18	ENSODEP00000001846	ENSODEP00000015995	annotation not available	WD repeat domain 18.	0.968
ENSODEP00000001846	ZNF593	ENSODEP00000001846	ENSODEP00000005113	annotation not available	Zinc finger protein 593.	0.964
ENSODEP00000002012	ENSODEP00000001846	ENSODEP00000002012	ENSODEP00000001846	annotation not available	annotation not available	0.968
ENSODEP00000002012	ENSODEP00000007616	ENSODEP00000002012	ENSODEP00000007616	annotation not available	annotation not available	0.930
ENSODEP00000002012	ENSODEP00000008366	ENSODEP00000002012	ENSODEP00000008366	annotation not available	annotation not available	0.927
ENSODEP00000002012	NLE1	ENSODEP00000002012	ENSODEP00000020543	annotation not available	Notchless homolog 1.	0.934
ENSODEP00000002012	NOC2L	ENSODEP00000002012	ENSODEP00000012820	annotation not available	NOC2 like nucleolar associated transcriptional repressor.	0.944
ENSODEP00000002012	NOP53	ENSODEP00000002012	ENSODEP00000008981	annotation not available	NOP53 ribosome biogenesis factor.	0.936
ENSODEP00000002012	PES1	ENSODEP00000002012	ENSODEP00000004180	annotation not available	Pescadillo ribosomal biogenesis factor 1.	0.975
ENSODEP00000002012	RSL24D1	ENSODEP00000002012	ENSODEP00000007273	annotation not available	Ribosomal L24 domain containing 1.	0.980
ENSODEP00000002012	WDR18	ENSODEP00000002012	ENSODEP00000015995	annotation not available	WD repeat domain 18.	0.828
ENSODEP00000002012	ZNF593	ENSODEP00000002012	ENSODEP00000005113	annotation not available	Zinc finger protein 593.	0.923