Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001855annotation not available (205 aa)    
Predicted Functional Partners:
DDX39B
DExD-box helicase 39B.
   
 0.987
ALYREF
Aly/REF export factor.
   
 0.980
EIF4A3
Eukaryotic translation initiation factor 4A3.
  
0.963
THOC2
THO complex 2.
   
 0.954
THOC3
THO complex 3.
    
 0.949
THOC7
THO complex 7.
   
 0.947
ENSODEP00000004744
annotation not available
   
 0.947
THOC1
THO complex 1.
   
 0.947
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.946
THOC6
THO complex 6.
   
 0.946
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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