PTBP3 protein (Octodon degus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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Score

PTBP3

Polypyrimidine tract binding protein 3. (554 aa)

Predicted Functional Partners:

PTBP1

0.954

ENSODEP00000022141

0.952

PTBP2

0.951

HNRNPAB

0.939

HNRNPD

0.938

ENSODEP00000007574

0.936

ELAVL1

0.936

ENSODEP00000022262

0.936

ENSODEP00000025484

0.936

Matr3

0.926

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELAVL1	ENSODEP00000007574	ENSODEP00000016549	ENSODEP00000007574	ELAV like RNA binding protein 1.	annotation not available	0.851
ELAVL1	ENSODEP00000022262	ENSODEP00000016549	ENSODEP00000022262	ELAV like RNA binding protein 1.	annotation not available	0.851
ELAVL1	ENSODEP00000025484	ENSODEP00000016549	ENSODEP00000025484	ELAV like RNA binding protein 1.	annotation not available	0.851
ELAVL1	HNRNPAB	ENSODEP00000016549	ENSODEP00000009143	ELAV like RNA binding protein 1.	Heterogeneous nuclear ribonucleoprotein A/B.	0.913
ELAVL1	HNRNPD	ENSODEP00000016549	ENSODEP00000002437	ELAV like RNA binding protein 1.	Heterogeneous nuclear ribonucleoprotein D.	0.972
ELAVL1	Matr3	ENSODEP00000016549	ENSODEP00000003943	ELAV like RNA binding protein 1.	Matrin 3.	0.896
ELAVL1	PTBP1	ENSODEP00000016549	ENSODEP00000016659	ELAV like RNA binding protein 1.	Polypyrimidine tract binding protein 1.	0.992
ELAVL1	PTBP2	ENSODEP00000016549	ENSODEP00000007368	ELAV like RNA binding protein 1.	Polypyrimidine tract binding protein 2.	0.975
ELAVL1	PTBP3	ENSODEP00000016549	ENSODEP00000001857	ELAV like RNA binding protein 1.	Polypyrimidine tract binding protein 3.	0.936
ENSODEP00000007574	ELAVL1	ENSODEP00000007574	ENSODEP00000016549	annotation not available	ELAV like RNA binding protein 1.	0.851
ENSODEP00000007574	ENSODEP00000022141	ENSODEP00000007574	ENSODEP00000022141	annotation not available	annotation not available	0.816
ENSODEP00000007574	HNRNPAB	ENSODEP00000007574	ENSODEP00000009143	annotation not available	Heterogeneous nuclear ribonucleoprotein A/B.	0.942
ENSODEP00000007574	HNRNPD	ENSODEP00000007574	ENSODEP00000002437	annotation not available	Heterogeneous nuclear ribonucleoprotein D.	0.970
ENSODEP00000007574	Matr3	ENSODEP00000007574	ENSODEP00000003943	annotation not available	Matrin 3.	0.790
ENSODEP00000007574	PTBP1	ENSODEP00000007574	ENSODEP00000016659	annotation not available	Polypyrimidine tract binding protein 1.	0.985
ENSODEP00000007574	PTBP2	ENSODEP00000007574	ENSODEP00000007368	annotation not available	Polypyrimidine tract binding protein 2.	0.892
ENSODEP00000007574	PTBP3	ENSODEP00000007574	ENSODEP00000001857	annotation not available	Polypyrimidine tract binding protein 3.	0.936
ENSODEP00000022141	ENSODEP00000007574	ENSODEP00000022141	ENSODEP00000007574	annotation not available	annotation not available	0.816
ENSODEP00000022141	ENSODEP00000022262	ENSODEP00000022141	ENSODEP00000022262	annotation not available	annotation not available	0.816
ENSODEP00000022141	ENSODEP00000025484	ENSODEP00000022141	ENSODEP00000025484	annotation not available	annotation not available	0.816