FAM83B protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

FAM83B

Family with sequence similarity 83 member B. (831 aa)

Predicted Functional Partners:

LOC101592056

0.900

ANLN

0.862

ENSODEP00000001604

0.810

Csnk1a1

0.810

ENSODEP00000010073

0.810

ENSODEP00000010526

0.795

ENSODEP00000022372

0.795

FAM83D

0.766

ENSODEP00000016752

0.743

VRK3

0.725

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANLN	Csnk1a1	ENSODEP00000010887	ENSODEP00000008488	Anillin actin binding protein.	annotation not available	0.666
ANLN	ENSODEP00000001604	ENSODEP00000010887	ENSODEP00000001604	Anillin actin binding protein.	annotation not available	0.666
ANLN	ENSODEP00000010073	ENSODEP00000010887	ENSODEP00000010073	Anillin actin binding protein.	annotation not available	0.666
ANLN	ENSODEP00000010526	ENSODEP00000010887	ENSODEP00000010526	Anillin actin binding protein.	annotation not available	0.743
ANLN	ENSODEP00000022372	ENSODEP00000010887	ENSODEP00000022372	Anillin actin binding protein.	annotation not available	0.743
ANLN	FAM83B	ENSODEP00000010887	ENSODEP00000001874	Anillin actin binding protein.	Family with sequence similarity 83 member B.	0.862
ANLN	FAM83D	ENSODEP00000010887	ENSODEP00000019245	Anillin actin binding protein.	Family with sequence similarity 83 member D.	0.414
ANLN	LOC101592056	ENSODEP00000010887	ENSODEP00000018219	Anillin actin binding protein.	annotation not available	0.638
Csnk1a1	ANLN	ENSODEP00000008488	ENSODEP00000010887	annotation not available	Anillin actin binding protein.	0.666
Csnk1a1	ENSODEP00000010526	ENSODEP00000008488	ENSODEP00000010526	annotation not available	annotation not available	0.928
Csnk1a1	ENSODEP00000022372	ENSODEP00000008488	ENSODEP00000022372	annotation not available	annotation not available	0.928
Csnk1a1	FAM83B	ENSODEP00000008488	ENSODEP00000001874	annotation not available	Family with sequence similarity 83 member B.	0.810
Csnk1a1	FAM83D	ENSODEP00000008488	ENSODEP00000019245	annotation not available	Family with sequence similarity 83 member D.	0.856
Csnk1a1	LOC101592056	ENSODEP00000008488	ENSODEP00000018219	annotation not available	annotation not available	0.923
Csnk1a1	VRK3	ENSODEP00000008488	ENSODEP00000022471	annotation not available	VRK serine/threonine kinase 3.	0.773
ENSODEP00000001604	ANLN	ENSODEP00000001604	ENSODEP00000010887	annotation not available	Anillin actin binding protein.	0.666
ENSODEP00000001604	ENSODEP00000010526	ENSODEP00000001604	ENSODEP00000010526	annotation not available	annotation not available	0.928
ENSODEP00000001604	ENSODEP00000022372	ENSODEP00000001604	ENSODEP00000022372	annotation not available	annotation not available	0.928
ENSODEP00000001604	FAM83B	ENSODEP00000001604	ENSODEP00000001874	annotation not available	Family with sequence similarity 83 member B.	0.810
ENSODEP00000001604	FAM83D	ENSODEP00000001604	ENSODEP00000019245	annotation not available	Family with sequence similarity 83 member D.	0.856