TRIM66 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TRIM66

Tripartite motif containing 66. (1349 aa)

Predicted Functional Partners:

ENSODEP00000018031

0.862

TRIM8

0.827

ENSODEP00000001396

0.812

ENSODEP00000004498

0.812

ENSODEP00000004786

0.812

ENSODEP00000007100

0.812

ENSODEP00000008618

0.812

ENSODEP00000010286

0.812

ENSODEP00000010709

0.812

CBX3

0.812

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBX3	ENSODEP00000018031	ENSODEP00000011310	ENSODEP00000018031	Chromobox 3.	annotation not available	0.829
CBX3	TRIM66	ENSODEP00000011310	ENSODEP00000001875	Chromobox 3.	Tripartite motif containing 66.	0.812
ENSODEP00000001396	ENSODEP00000018031	ENSODEP00000001396	ENSODEP00000018031	annotation not available	annotation not available	0.829
ENSODEP00000001396	TRIM66	ENSODEP00000001396	ENSODEP00000001875	annotation not available	Tripartite motif containing 66.	0.812
ENSODEP00000004498	ENSODEP00000018031	ENSODEP00000004498	ENSODEP00000018031	annotation not available	annotation not available	0.829
ENSODEP00000004498	TRIM66	ENSODEP00000004498	ENSODEP00000001875	annotation not available	Tripartite motif containing 66.	0.812
ENSODEP00000004786	ENSODEP00000018031	ENSODEP00000004786	ENSODEP00000018031	annotation not available	annotation not available	0.829
ENSODEP00000004786	TRIM66	ENSODEP00000004786	ENSODEP00000001875	annotation not available	Tripartite motif containing 66.	0.812
ENSODEP00000007100	ENSODEP00000018031	ENSODEP00000007100	ENSODEP00000018031	annotation not available	annotation not available	0.829
ENSODEP00000007100	TRIM66	ENSODEP00000007100	ENSODEP00000001875	annotation not available	Tripartite motif containing 66.	0.812
ENSODEP00000008618	ENSODEP00000018031	ENSODEP00000008618	ENSODEP00000018031	annotation not available	annotation not available	0.829
ENSODEP00000008618	TRIM66	ENSODEP00000008618	ENSODEP00000001875	annotation not available	Tripartite motif containing 66.	0.812
ENSODEP00000010286	ENSODEP00000018031	ENSODEP00000010286	ENSODEP00000018031	annotation not available	annotation not available	0.829
ENSODEP00000010286	TRIM66	ENSODEP00000010286	ENSODEP00000001875	annotation not available	Tripartite motif containing 66.	0.812
ENSODEP00000010709	ENSODEP00000018031	ENSODEP00000010709	ENSODEP00000018031	annotation not available	annotation not available	0.829
ENSODEP00000010709	TRIM66	ENSODEP00000010709	ENSODEP00000001875	annotation not available	Tripartite motif containing 66.	0.812
ENSODEP00000018031	CBX3	ENSODEP00000018031	ENSODEP00000011310	annotation not available	Chromobox 3.	0.829
ENSODEP00000018031	ENSODEP00000001396	ENSODEP00000018031	ENSODEP00000001396	annotation not available	annotation not available	0.829
ENSODEP00000018031	ENSODEP00000004498	ENSODEP00000018031	ENSODEP00000004498	annotation not available	annotation not available	0.829
ENSODEP00000018031	ENSODEP00000004786	ENSODEP00000018031	ENSODEP00000004786	annotation not available	annotation not available	0.829