STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
P3H1Prolyl 3-hydroxylase 1. (737 aa)    
Predicted Functional Partners:
PPIB
Peptidylprolyl isomerase B.
    
 0.986
CRTAP
Cartilage associated protein.
   
 0.985
P3H4
Prolyl 3-hydroxylase family member 4 (inactive).
   
 0.985
NUDCD1
NudC domain containing 1.
    
   0.896
WDR19
WD repeat domain 19.
      
 0.885
COL1A2
Collagen type I alpha 2 chain.
    
 0.870
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 
 0.853
SLC26A2
Solute carrier family 26 member 2.
      
 0.837
SERPINH1
Serpin family H member 1.
   
 
 0.821
COL1A1
Collagen type I alpha 1 chain.
    
 0.820
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.