ABHD8 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABHD8

Abhydrolase domain containing 8. (436 aa)

Predicted Functional Partners:

ACSF2

0.934

TAT

0.863

ENSODEP00000011483

0.811

ENSODEP00000012067

0.811

ENSODEP00000004232

0.809

ENSODEP00000000966

0.777

ENSODEP00000007781

0.777

HYKK

0.777

ENSODEP00000022736

0.777

ENSODEP00000011371

0.732

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABHD8	ACSF2	ENSODEP00000001879	ENSODEP00000023123	Abhydrolase domain containing 8.	acyl-CoA synthetase family member 2.	0.934
ABHD8	ENSODEP00000000966	ENSODEP00000001879	ENSODEP00000000966	Abhydrolase domain containing 8.	annotation not available	0.777
ABHD8	ENSODEP00000004232	ENSODEP00000001879	ENSODEP00000004232	Abhydrolase domain containing 8.	annotation not available	0.809
ABHD8	ENSODEP00000007781	ENSODEP00000001879	ENSODEP00000007781	Abhydrolase domain containing 8.	annotation not available	0.777
ABHD8	ENSODEP00000011371	ENSODEP00000001879	ENSODEP00000011371	Abhydrolase domain containing 8.	annotation not available	0.732
ABHD8	ENSODEP00000011483	ENSODEP00000001879	ENSODEP00000011483	Abhydrolase domain containing 8.	annotation not available	0.811
ABHD8	ENSODEP00000012067	ENSODEP00000001879	ENSODEP00000012067	Abhydrolase domain containing 8.	annotation not available	0.811
ABHD8	ENSODEP00000022736	ENSODEP00000001879	ENSODEP00000022736	Abhydrolase domain containing 8.	annotation not available	0.777
ABHD8	HYKK	ENSODEP00000001879	ENSODEP00000019271	Abhydrolase domain containing 8.	Hydroxylysine kinase.	0.777
ABHD8	TAT	ENSODEP00000001879	ENSODEP00000019142	Abhydrolase domain containing 8.	Tyrosine aminotransferase.	0.863
ACSF2	ABHD8	ENSODEP00000023123	ENSODEP00000001879	acyl-CoA synthetase family member 2.	Abhydrolase domain containing 8.	0.934
ACSF2	ENSODEP00000000966	ENSODEP00000023123	ENSODEP00000000966	acyl-CoA synthetase family member 2.	annotation not available	0.551
ACSF2	ENSODEP00000007781	ENSODEP00000023123	ENSODEP00000007781	acyl-CoA synthetase family member 2.	annotation not available	0.551
ACSF2	ENSODEP00000011483	ENSODEP00000023123	ENSODEP00000011483	acyl-CoA synthetase family member 2.	annotation not available	0.565
ACSF2	ENSODEP00000012067	ENSODEP00000023123	ENSODEP00000012067	acyl-CoA synthetase family member 2.	annotation not available	0.565
ACSF2	ENSODEP00000022736	ENSODEP00000023123	ENSODEP00000022736	acyl-CoA synthetase family member 2.	annotation not available	0.551
ACSF2	HYKK	ENSODEP00000023123	ENSODEP00000019271	acyl-CoA synthetase family member 2.	Hydroxylysine kinase.	0.481
ACSF2	TAT	ENSODEP00000023123	ENSODEP00000019142	acyl-CoA synthetase family member 2.	Tyrosine aminotransferase.	0.404
ENSODEP00000000966	ABHD8	ENSODEP00000000966	ENSODEP00000001879	annotation not available	Abhydrolase domain containing 8.	0.777
ENSODEP00000000966	ACSF2	ENSODEP00000000966	ENSODEP00000023123	annotation not available	acyl-CoA synthetase family member 2.	0.551