ENSODEP00000001887 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000001887

annotation not available (602 aa)

Predicted Functional Partners:

PDLIM7

0.840

TRAF6

0.794

ENSODEP00000018031

0.783

ETS2

0.758

INTS3

0.747

INTS1

0.745

PPIG

0.743

ENSODEP00000006385

0.739

LOC101578708

0.739

ENSODEP00000008901

0.739

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000001887	ENSODEP00000006385	ENSODEP00000001887	ENSODEP00000006385	annotation not available	annotation not available	0.739
ENSODEP00000001887	ENSODEP00000008901	ENSODEP00000001887	ENSODEP00000008901	annotation not available	annotation not available	0.739
ENSODEP00000001887	ENSODEP00000018031	ENSODEP00000001887	ENSODEP00000018031	annotation not available	annotation not available	0.783
ENSODEP00000001887	ETS2	ENSODEP00000001887	ENSODEP00000016379	annotation not available	ETS proto-oncogene 2, transcription factor.	0.758
ENSODEP00000001887	INTS1	ENSODEP00000001887	ENSODEP00000015193	annotation not available	Integrator complex subunit 1.	0.745
ENSODEP00000001887	INTS3	ENSODEP00000001887	ENSODEP00000017079	annotation not available	Integrator complex subunit 3.	0.747
ENSODEP00000001887	LOC101578708	ENSODEP00000001887	ENSODEP00000008500	annotation not available	Histone H3.3.	0.739
ENSODEP00000001887	PDLIM7	ENSODEP00000001887	ENSODEP00000010413	annotation not available	PDZ and LIM domain 7.	0.840
ENSODEP00000001887	PPIG	ENSODEP00000001887	ENSODEP00000016409	annotation not available	Peptidylprolyl isomerase G.	0.743
ENSODEP00000001887	TRAF6	ENSODEP00000001887	ENSODEP00000023288	annotation not available	TNF receptor associated factor 6.	0.794
ENSODEP00000006385	ENSODEP00000001887	ENSODEP00000006385	ENSODEP00000001887	annotation not available	annotation not available	0.739
ENSODEP00000006385	ENSODEP00000018031	ENSODEP00000006385	ENSODEP00000018031	annotation not available	annotation not available	0.975
ENSODEP00000006385	INTS1	ENSODEP00000006385	ENSODEP00000015193	annotation not available	Integrator complex subunit 1.	0.576
ENSODEP00000006385	TRAF6	ENSODEP00000006385	ENSODEP00000023288	annotation not available	TNF receptor associated factor 6.	0.488
ENSODEP00000008901	ENSODEP00000001887	ENSODEP00000008901	ENSODEP00000001887	annotation not available	annotation not available	0.739
ENSODEP00000008901	ENSODEP00000018031	ENSODEP00000008901	ENSODEP00000018031	annotation not available	annotation not available	0.975
ENSODEP00000008901	INTS1	ENSODEP00000008901	ENSODEP00000015193	annotation not available	Integrator complex subunit 1.	0.576
ENSODEP00000008901	TRAF6	ENSODEP00000008901	ENSODEP00000023288	annotation not available	TNF receptor associated factor 6.	0.488
ENSODEP00000018031	ENSODEP00000001887	ENSODEP00000018031	ENSODEP00000001887	annotation not available	annotation not available	0.783
ENSODEP00000018031	ENSODEP00000006385	ENSODEP00000018031	ENSODEP00000006385	annotation not available	annotation not available	0.975