ENSODEP00000001900 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

ENSODEP00000001900

annotation not available (432 aa)

Predicted Functional Partners:

TP53BP1

0.849

FUT8

0.773

PAXIP1

0.752

ENSODEP00000011039

0.748

ENSODEP00000010034

0.722

MRE11

0.689

NUDCD1

0.669

ENSODEP00000006216

0.665

ENSODEP00000012954

0.665

Rps27a

0.665

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000001900	ENSODEP00000006216	ENSODEP00000001900	ENSODEP00000006216	annotation not available	annotation not available	0.665
ENSODEP00000001900	ENSODEP00000010034	ENSODEP00000001900	ENSODEP00000010034	annotation not available	annotation not available	0.722
ENSODEP00000001900	ENSODEP00000011039	ENSODEP00000001900	ENSODEP00000011039	annotation not available	annotation not available	0.748
ENSODEP00000001900	ENSODEP00000012954	ENSODEP00000001900	ENSODEP00000012954	annotation not available	annotation not available	0.665
ENSODEP00000001900	FUT8	ENSODEP00000001900	ENSODEP00000018458	annotation not available	Fucosyltransferase 8.	0.773
ENSODEP00000001900	MRE11	ENSODEP00000001900	ENSODEP00000020046	annotation not available	MRE11 homolog, double strand break repair nuclease.	0.689
ENSODEP00000001900	NUDCD1	ENSODEP00000001900	ENSODEP00000004424	annotation not available	NudC domain containing 1.	0.669
ENSODEP00000001900	PAXIP1	ENSODEP00000001900	ENSODEP00000015289	annotation not available	PAX interacting protein 1.	0.752
ENSODEP00000001900	Rps27a	ENSODEP00000001900	ENSODEP00000018046	annotation not available	annotation not available	0.665
ENSODEP00000001900	TP53BP1	ENSODEP00000001900	ENSODEP00000022290	annotation not available	Tumor protein p53 binding protein 1.	0.849
ENSODEP00000006216	ENSODEP00000001900	ENSODEP00000006216	ENSODEP00000001900	annotation not available	annotation not available	0.665
ENSODEP00000006216	ENSODEP00000010034	ENSODEP00000006216	ENSODEP00000010034	annotation not available	annotation not available	0.619
ENSODEP00000006216	ENSODEP00000011039	ENSODEP00000006216	ENSODEP00000011039	annotation not available	annotation not available	0.847
ENSODEP00000006216	MRE11	ENSODEP00000006216	ENSODEP00000020046	annotation not available	MRE11 homolog, double strand break repair nuclease.	0.704
ENSODEP00000006216	PAXIP1	ENSODEP00000006216	ENSODEP00000015289	annotation not available	PAX interacting protein 1.	0.659
ENSODEP00000006216	TP53BP1	ENSODEP00000006216	ENSODEP00000022290	annotation not available	Tumor protein p53 binding protein 1.	0.930
ENSODEP00000010034	ENSODEP00000001900	ENSODEP00000010034	ENSODEP00000001900	annotation not available	annotation not available	0.722
ENSODEP00000010034	ENSODEP00000006216	ENSODEP00000010034	ENSODEP00000006216	annotation not available	annotation not available	0.619
ENSODEP00000010034	ENSODEP00000011039	ENSODEP00000010034	ENSODEP00000011039	annotation not available	annotation not available	0.963
ENSODEP00000010034	ENSODEP00000012954	ENSODEP00000010034	ENSODEP00000012954	annotation not available	annotation not available	0.619