M6PR protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

M6PR

Mannose-6-phosphate receptor, cation dependent. (278 aa)

Predicted Functional Partners:

IGF2R

0.988

GGA3

0.978

PLIN3

0.944

ENSODEP00000015600

0.910

PLIN1

0.900

VTI1A

0.899

GGA2

0.868

ARSA

0.865

PLIN2

0.863

ENSODEP00000015392

0.834

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARSA	IGF2R	ENSODEP00000021393	ENSODEP00000009496	Arylsulfatase A.	Insulin like growth factor 2 receptor.	0.488
ARSA	M6PR	ENSODEP00000021393	ENSODEP00000001918	Arylsulfatase A.	Mannose-6-phosphate receptor, cation dependent.	0.865
ENSODEP00000015392	ENSODEP00000015600	ENSODEP00000015392	ENSODEP00000015600	annotation not available	annotation not available	0.461
ENSODEP00000015392	GGA2	ENSODEP00000015392	ENSODEP00000019578	annotation not available	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	0.595
ENSODEP00000015392	GGA3	ENSODEP00000015392	ENSODEP00000014073	annotation not available	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	0.555
ENSODEP00000015392	IGF2R	ENSODEP00000015392	ENSODEP00000009496	annotation not available	Insulin like growth factor 2 receptor.	0.816
ENSODEP00000015392	M6PR	ENSODEP00000015392	ENSODEP00000001918	annotation not available	Mannose-6-phosphate receptor, cation dependent.	0.834
ENSODEP00000015392	PLIN1	ENSODEP00000015392	ENSODEP00000021046	annotation not available	Perilipin 1.	0.698
ENSODEP00000015392	PLIN2	ENSODEP00000015392	ENSODEP00000019448	annotation not available	Perilipin 2.	0.630
ENSODEP00000015392	PLIN3	ENSODEP00000015392	ENSODEP00000019506	annotation not available	Perilipin 3.	0.751
ENSODEP00000015392	VTI1A	ENSODEP00000015392	ENSODEP00000013518	annotation not available	Vesicle transport through interaction with t-SNAREs 1A.	0.739
ENSODEP00000015600	ENSODEP00000015392	ENSODEP00000015600	ENSODEP00000015392	annotation not available	annotation not available	0.461
ENSODEP00000015600	GGA2	ENSODEP00000015600	ENSODEP00000019578	annotation not available	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	0.998
ENSODEP00000015600	GGA3	ENSODEP00000015600	ENSODEP00000014073	annotation not available	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	0.997
ENSODEP00000015600	IGF2R	ENSODEP00000015600	ENSODEP00000009496	annotation not available	Insulin like growth factor 2 receptor.	0.976
ENSODEP00000015600	M6PR	ENSODEP00000015600	ENSODEP00000001918	annotation not available	Mannose-6-phosphate receptor, cation dependent.	0.910
GGA2	ENSODEP00000015392	ENSODEP00000019578	ENSODEP00000015392	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	annotation not available	0.595
GGA2	ENSODEP00000015600	ENSODEP00000019578	ENSODEP00000015600	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	annotation not available	0.998
GGA2	GGA3	ENSODEP00000019578	ENSODEP00000014073	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	0.997
GGA2	IGF2R	ENSODEP00000019578	ENSODEP00000009496	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	Insulin like growth factor 2 receptor.	0.978