Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001929annotation not available (102 aa)    
Predicted Functional Partners:
PCBP1
poly(rC) binding protein 1.
   
 0.982
ENSODEP00000002853
annotation not available
   
 0.977
HNRNPU
Heterogeneous nuclear ribonucleoprotein U.
   
 0.977
PTBP1
Polypyrimidine tract binding protein 1.
   
 0.966
HNRNPD
Heterogeneous nuclear ribonucleoprotein D.
   
 0.960
SYNCRIP
Synaptotagmin binding cytoplasmic RNA interacting protein.
   
 0.960
HNRNPA0
Heterogeneous nuclear ribonucleoprotein A0.
   
 0.951
ENSODEP00000000796
annotation not available
   
 0.946
ENSODEP00000007327
annotation not available
   
 0.946
ENSODEP00000007709
annotation not available
   
 0.946
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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