STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001936annotation not available (289 aa)    
Predicted Functional Partners:
HNRNPAB
Heterogeneous nuclear ribonucleoprotein A/B.
   
 0.955
YBX3
Y-box binding protein 3.
   
   0.946
HNRNPD
Heterogeneous nuclear ribonucleoprotein D.
   
 0.942
DHX9
DExH-box helicase 9.
  
 0.927
EIF4A3
Eukaryotic translation initiation factor 4A3.
  
 0.915
YBX2
Y-box binding protein 2.
   
   0.911
ALYREF
Aly/REF export factor.
   
 0.910
SYNCRIP
Synaptotagmin binding cytoplasmic RNA interacting protein.
   
 0.901
SRSF9
Serine and arginine rich splicing factor 9.
  
 0.893
DDX6
DEAD-box helicase 6.
  
 0.874
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.