STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JPH4Junctophilin 4. (628 aa)    
Predicted Functional Partners:
ARHGAP29
Rho GTPase activating protein 29.
   
   0.771
LRGUK
Leucine rich repeats and guanylate kinase domain containing.
    
 
 0.762
JPH3
Junctophilin 3.
  
0.760
JPH1
Junctophilin 1.
  
0.759
JPH2
Junctophilin 2.
  
0.757
NME8
NME/NM23 family member 8.
   
 
 0.751
ENSODEP00000020619
annotation not available
   
 0.718
DNALI1
Dynein axonemal light intermediate chain 1.
   
 
 0.707
CCDC65
Coiled-coil domain containing 65.
    
 
 0.704
NKTR
Natural killer cell triggering receptor.
   
 
 0.701
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.