STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CHERPCalcium homeostasis endoplasmic reticulum protein. (890 aa)    
Predicted Functional Partners:
U2SURP
U2 snRNP associated SURP domain containing.
   
 0.999
RBM17
RNA binding motif protein 17.
   
 0.993
ENSODEP00000009740
annotation not available
   
 0.993
ENSODEP00000018621
annotation not available
   
 0.993
ENSODEP00000024623
annotation not available
   
 0.991
ENSODEP00000000443
annotation not available
   
 0.988
SF3A1
Splicing factor 3a subunit 1.
   
 0.988
Dhx15
annotation not available
   
 0.988
ENSODEP00000016889
annotation not available
   
 0.970
ENSODEP00000017795
annotation not available
   
 0.970
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.