Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001947annotation not available (95 aa)    
Predicted Functional Partners:
TAF1D
TATA-box binding protein associated factor, RNA polymerase I subunit D.
    
 0.934
TAF1A
TATA-box binding protein associated factor, RNA polymerase I subunit A.
    
 0.931
TBP
TATA-box binding protein.
   
 0.879
TBPL2
TATA-box binding protein like 2.
   
 0.879
SUOX
Sulfite oxidase.
  
  0.845
ENSODEP00000012766
annotation not available
   
  0.835
ENSODEP00000015502
annotation not available
   
  0.835
RRN3
RRN3 homolog, RNA polymerase I transcription factor.
    
 0.818
ENSODEP00000006083
annotation not available
    
 0.808
CDK20
Cyclin dependent kinase 20.
    
 0.808
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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