ENSODEP00000001948 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000001948

annotation not available (160 aa)

Predicted Functional Partners:

Aifm1

0.922

BUD31

0.881

BSG

0.876

ENSODEP00000001190

0.860

ENSODEP00000013484

0.860

ENSODEP00000020274

0.860

ENSODEP00000024013

0.860

MACROH2A1

0.848

MACROH2A2

0.848

PRPF19

0.847

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Aifm1	ENSODEP00000001948	ENSODEP00000015771	ENSODEP00000001948	annotation not available	annotation not available	0.922
Aifm1	MACROH2A1	ENSODEP00000015771	ENSODEP00000010780	annotation not available	Core histone macro-H2A.1.	0.972
Aifm1	MACROH2A2	ENSODEP00000015771	ENSODEP00000018509	annotation not available	macroH2A.2 histone.	0.972
BSG	ENSODEP00000001948	ENSODEP00000016573	ENSODEP00000001948	Basigin (Ok blood group).	annotation not available	0.876
BUD31	ENSODEP00000001948	ENSODEP00000015200	ENSODEP00000001948	BUD31 homolog.	annotation not available	0.881
BUD31	PRPF19	ENSODEP00000015200	ENSODEP00000005350	BUD31 homolog.	pre-mRNA processing factor 19.	0.984
ENSODEP00000001190	ENSODEP00000001948	ENSODEP00000001190	ENSODEP00000001948	annotation not available	annotation not available	0.860
ENSODEP00000001948	Aifm1	ENSODEP00000001948	ENSODEP00000015771	annotation not available	annotation not available	0.922
ENSODEP00000001948	BSG	ENSODEP00000001948	ENSODEP00000016573	annotation not available	Basigin (Ok blood group).	0.876
ENSODEP00000001948	BUD31	ENSODEP00000001948	ENSODEP00000015200	annotation not available	BUD31 homolog.	0.881
ENSODEP00000001948	ENSODEP00000001190	ENSODEP00000001948	ENSODEP00000001190	annotation not available	annotation not available	0.860
ENSODEP00000001948	ENSODEP00000013484	ENSODEP00000001948	ENSODEP00000013484	annotation not available	annotation not available	0.860
ENSODEP00000001948	ENSODEP00000020274	ENSODEP00000001948	ENSODEP00000020274	annotation not available	annotation not available	0.860
ENSODEP00000001948	ENSODEP00000024013	ENSODEP00000001948	ENSODEP00000024013	annotation not available	annotation not available	0.860
ENSODEP00000001948	MACROH2A1	ENSODEP00000001948	ENSODEP00000010780	annotation not available	Core histone macro-H2A.1.	0.848
ENSODEP00000001948	MACROH2A2	ENSODEP00000001948	ENSODEP00000018509	annotation not available	macroH2A.2 histone.	0.848
ENSODEP00000001948	PRPF19	ENSODEP00000001948	ENSODEP00000005350	annotation not available	pre-mRNA processing factor 19.	0.847
ENSODEP00000013484	ENSODEP00000001948	ENSODEP00000013484	ENSODEP00000001948	annotation not available	annotation not available	0.860
ENSODEP00000020274	ENSODEP00000001948	ENSODEP00000020274	ENSODEP00000001948	annotation not available	annotation not available	0.860
ENSODEP00000024013	ENSODEP00000001948	ENSODEP00000024013	ENSODEP00000001948	annotation not available	annotation not available	0.860