NCOA4 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

NCOA4

Nuclear receptor coactivator 4. (627 aa)

Predicted Functional Partners:

CCDC6

0.987

RET

0.987

ENSODEP00000010697

0.972

ENSODEP00000015775

0.972

ENSODEP00000020470

0.972

ENSODEP00000020593

0.972

ENSODEP00000023256

0.972

ENSODEP00000025369

0.972

HERC2

0.966

ENSODEP00000000383

0.957

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCDC6	NCOA4	ENSODEP00000000119	ENSODEP00000001949	Coiled-coil domain containing 6.	Nuclear receptor coactivator 4.	0.987
CCDC6	RET	ENSODEP00000000119	ENSODEP00000005972	Coiled-coil domain containing 6.	Ret proto-oncogene.	0.984
ENSODEP00000000383	ENSODEP00000010697	ENSODEP00000000383	ENSODEP00000010697	annotation not available	annotation not available	0.908
ENSODEP00000000383	ENSODEP00000015775	ENSODEP00000000383	ENSODEP00000015775	annotation not available	annotation not available	0.908
ENSODEP00000000383	ENSODEP00000020470	ENSODEP00000000383	ENSODEP00000020470	annotation not available	annotation not available	0.908
ENSODEP00000000383	ENSODEP00000020593	ENSODEP00000000383	ENSODEP00000020593	annotation not available	annotation not available	0.908
ENSODEP00000000383	ENSODEP00000023256	ENSODEP00000000383	ENSODEP00000023256	annotation not available	annotation not available	0.908
ENSODEP00000000383	ENSODEP00000025369	ENSODEP00000000383	ENSODEP00000025369	annotation not available	annotation not available	0.908
ENSODEP00000000383	NCOA4	ENSODEP00000000383	ENSODEP00000001949	annotation not available	Nuclear receptor coactivator 4.	0.957
ENSODEP00000010697	ENSODEP00000000383	ENSODEP00000010697	ENSODEP00000000383	annotation not available	annotation not available	0.908
ENSODEP00000010697	NCOA4	ENSODEP00000010697	ENSODEP00000001949	annotation not available	Nuclear receptor coactivator 4.	0.972
ENSODEP00000015775	ENSODEP00000000383	ENSODEP00000015775	ENSODEP00000000383	annotation not available	annotation not available	0.908
ENSODEP00000015775	NCOA4	ENSODEP00000015775	ENSODEP00000001949	annotation not available	Nuclear receptor coactivator 4.	0.972
ENSODEP00000020470	ENSODEP00000000383	ENSODEP00000020470	ENSODEP00000000383	annotation not available	annotation not available	0.908
ENSODEP00000020470	NCOA4	ENSODEP00000020470	ENSODEP00000001949	annotation not available	Nuclear receptor coactivator 4.	0.972
ENSODEP00000020593	ENSODEP00000000383	ENSODEP00000020593	ENSODEP00000000383	annotation not available	annotation not available	0.908
ENSODEP00000020593	NCOA4	ENSODEP00000020593	ENSODEP00000001949	annotation not available	Nuclear receptor coactivator 4.	0.972
ENSODEP00000023256	ENSODEP00000000383	ENSODEP00000023256	ENSODEP00000000383	annotation not available	annotation not available	0.908
ENSODEP00000023256	NCOA4	ENSODEP00000023256	ENSODEP00000001949	annotation not available	Nuclear receptor coactivator 4.	0.972
ENSODEP00000025369	ENSODEP00000000383	ENSODEP00000025369	ENSODEP00000000383	annotation not available	annotation not available	0.908