STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000001957annotation not available (87 aa)    
Predicted Functional Partners:
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.996
SNRPG
Small nuclear ribonucleoprotein G.
   
 0.996
SNRPD1
Small nuclear ribonucleoprotein Sm D1.
   
 0.995
ENSODEP00000021839
annotation not available
   
 0.990
ENSODEP00000010819
annotation not available
   
 0.984
ENSODEP00000025997
annotation not available
   
 0.984
ENSODEP00000026701
annotation not available
   
 0.984
LSM10
LSM10, U7 small nuclear RNA associated.
   
 0.974
SNRNP70
Small nuclear ribonucleoprotein U1 subunit 70.
   
 0.973
LSM2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.969
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.