RETREG1 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-occurrence

Co-expression

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[Homology]

Score

RETREG1

Reticulophagy regulator 1. (348 aa)

Predicted Functional Partners:

NMD3

0.943

RSL24D1

0.940

ENSODEP00000002012

0.933

GABARAP

0.923

GABARAPL1

0.907

MAP1LC3A

0.852

GNL1

0.849

ENSODEP00000004861

0.844

ENSODEP00000012762

0.844

ENSODEP00000014293

0.844

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000002012	NMD3	ENSODEP00000002012	ENSODEP00000008402	annotation not available	NMD3 ribosome export adaptor.	0.989
ENSODEP00000002012	RETREG1	ENSODEP00000002012	ENSODEP00000001974	annotation not available	Reticulophagy regulator 1.	0.933
ENSODEP00000002012	RSL24D1	ENSODEP00000002012	ENSODEP00000007273	annotation not available	Ribosomal L24 domain containing 1.	0.980
ENSODEP00000004861	GABARAP	ENSODEP00000004861	ENSODEP00000023875	annotation not available	GABA type A receptor-associated protein.	0.917
ENSODEP00000004861	GABARAPL1	ENSODEP00000004861	ENSODEP00000013583	annotation not available	GABA type A receptor associated protein like 1.	0.916
ENSODEP00000004861	MAP1LC3A	ENSODEP00000004861	ENSODEP00000017626	annotation not available	Microtubule associated protein 1 light chain 3 alpha.	0.980
ENSODEP00000004861	RETREG1	ENSODEP00000004861	ENSODEP00000001974	annotation not available	Reticulophagy regulator 1.	0.844
ENSODEP00000012762	GABARAP	ENSODEP00000012762	ENSODEP00000023875	annotation not available	GABA type A receptor-associated protein.	0.917
ENSODEP00000012762	GABARAPL1	ENSODEP00000012762	ENSODEP00000013583	annotation not available	GABA type A receptor associated protein like 1.	0.916
ENSODEP00000012762	MAP1LC3A	ENSODEP00000012762	ENSODEP00000017626	annotation not available	Microtubule associated protein 1 light chain 3 alpha.	0.980
ENSODEP00000012762	RETREG1	ENSODEP00000012762	ENSODEP00000001974	annotation not available	Reticulophagy regulator 1.	0.844
ENSODEP00000014293	GABARAP	ENSODEP00000014293	ENSODEP00000023875	annotation not available	GABA type A receptor-associated protein.	0.934
ENSODEP00000014293	GABARAPL1	ENSODEP00000014293	ENSODEP00000013583	annotation not available	GABA type A receptor associated protein like 1.	0.916
ENSODEP00000014293	MAP1LC3A	ENSODEP00000014293	ENSODEP00000017626	annotation not available	Microtubule associated protein 1 light chain 3 alpha.	0.980
ENSODEP00000014293	RETREG1	ENSODEP00000014293	ENSODEP00000001974	annotation not available	Reticulophagy regulator 1.	0.844
GABARAP	ENSODEP00000004861	ENSODEP00000023875	ENSODEP00000004861	GABA type A receptor-associated protein.	annotation not available	0.917
GABARAP	ENSODEP00000012762	ENSODEP00000023875	ENSODEP00000012762	GABA type A receptor-associated protein.	annotation not available	0.917
GABARAP	ENSODEP00000014293	ENSODEP00000023875	ENSODEP00000014293	GABA type A receptor-associated protein.	annotation not available	0.934
GABARAP	GABARAPL1	ENSODEP00000023875	ENSODEP00000013583	GABA type A receptor-associated protein.	GABA type A receptor associated protein like 1.	0.927
GABARAP	MAP1LC3A	ENSODEP00000023875	ENSODEP00000017626	GABA type A receptor-associated protein.	Microtubule associated protein 1 light chain 3 alpha.	0.912