ENSODEP00000002001 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000002001

annotation not available (624 aa)

Predicted Functional Partners:

ENSODEP00000025351

0.783

NME8

0.692

GART

0.675

MYSM1

0.671

ATM

0.602

MAMLD1

0.576

ENSODEP00000011039

0.574

ENSODEP00000000138

0.573

DAP3

0.552

SUFU

0.543

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATM	ENSODEP00000002001	ENSODEP00000021283	ENSODEP00000002001	ATM serine/threonine kinase.	annotation not available	0.602
ATM	ENSODEP00000011039	ENSODEP00000021283	ENSODEP00000011039	ATM serine/threonine kinase.	annotation not available	0.974
ATM	MYSM1	ENSODEP00000021283	ENSODEP00000015759	ATM serine/threonine kinase.	Myb like, SWIRM and MPN domains 1.	0.712
DAP3	ENSODEP00000002001	ENSODEP00000014427	ENSODEP00000002001	Death associated protein 3.	annotation not available	0.552
DAP3	NME8	ENSODEP00000014427	ENSODEP00000010810	Death associated protein 3.	NME/NM23 family member 8.	0.864
ENSODEP00000000138	ENSODEP00000002001	ENSODEP00000000138	ENSODEP00000002001	annotation not available	annotation not available	0.573
ENSODEP00000000138	GART	ENSODEP00000000138	ENSODEP00000004873	annotation not available	annotation not available	0.661
ENSODEP00000000138	NME8	ENSODEP00000000138	ENSODEP00000010810	annotation not available	NME/NM23 family member 8.	0.960
ENSODEP00000002001	ATM	ENSODEP00000002001	ENSODEP00000021283	annotation not available	ATM serine/threonine kinase.	0.602
ENSODEP00000002001	DAP3	ENSODEP00000002001	ENSODEP00000014427	annotation not available	Death associated protein 3.	0.552
ENSODEP00000002001	ENSODEP00000000138	ENSODEP00000002001	ENSODEP00000000138	annotation not available	annotation not available	0.573
ENSODEP00000002001	ENSODEP00000011039	ENSODEP00000002001	ENSODEP00000011039	annotation not available	annotation not available	0.574
ENSODEP00000002001	ENSODEP00000025351	ENSODEP00000002001	ENSODEP00000025351	annotation not available	annotation not available	0.783
ENSODEP00000002001	GART	ENSODEP00000002001	ENSODEP00000004873	annotation not available	annotation not available	0.675
ENSODEP00000002001	MAMLD1	ENSODEP00000002001	ENSODEP00000001438	annotation not available	Mastermind like domain containing 1.	0.576
ENSODEP00000002001	MYSM1	ENSODEP00000002001	ENSODEP00000015759	annotation not available	Myb like, SWIRM and MPN domains 1.	0.671
ENSODEP00000002001	NME8	ENSODEP00000002001	ENSODEP00000010810	annotation not available	NME/NM23 family member 8.	0.692
ENSODEP00000002001	SUFU	ENSODEP00000002001	ENSODEP00000010356	annotation not available	SUFU negative regulator of hedgehog signaling.	0.543
ENSODEP00000011039	ATM	ENSODEP00000011039	ENSODEP00000021283	annotation not available	ATM serine/threonine kinase.	0.974
ENSODEP00000011039	ENSODEP00000002001	ENSODEP00000011039	ENSODEP00000002001	annotation not available	annotation not available	0.574