ENSODEP00000002016 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSODEP00000002016

annotation not available (582 aa)

Predicted Functional Partners:

MED14

0.998

ENSODEP00000003065

0.998

MED23

0.998

MED13

0.998

MED12

0.997

MED30

0.997

MED18

0.997

MED9

0.997

MED19

0.997

MED22

0.997

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000002016	ENSODEP00000003065	ENSODEP00000002016	ENSODEP00000003065	annotation not available	annotation not available	0.998
ENSODEP00000002016	MED12	ENSODEP00000002016	ENSODEP00000004293	annotation not available	Mediator complex subunit 12.	0.997
ENSODEP00000002016	MED13	ENSODEP00000002016	ENSODEP00000019622	annotation not available	Mediator complex subunit 13.	0.998
ENSODEP00000002016	MED14	ENSODEP00000002016	ENSODEP00000002000	annotation not available	Mediator complex subunit 14.	0.998
ENSODEP00000002016	MED18	ENSODEP00000002016	ENSODEP00000005002	annotation not available	Mediator complex subunit 18.	0.997
ENSODEP00000002016	MED19	ENSODEP00000002016	ENSODEP00000016077	annotation not available	Mediator complex subunit 19.	0.997
ENSODEP00000002016	MED22	ENSODEP00000002016	ENSODEP00000021369	annotation not available	Mediator complex subunit 22.	0.997
ENSODEP00000002016	MED23	ENSODEP00000002016	ENSODEP00000010651	annotation not available	Mediator complex subunit 23.	0.998
ENSODEP00000002016	MED30	ENSODEP00000002016	ENSODEP00000004318	annotation not available	Mediator complex subunit 30.	0.997
ENSODEP00000002016	MED9	ENSODEP00000002016	ENSODEP00000009251	annotation not available	Mediator complex subunit 9.	0.997
ENSODEP00000003065	ENSODEP00000002016	ENSODEP00000003065	ENSODEP00000002016	annotation not available	annotation not available	0.998
ENSODEP00000003065	MED12	ENSODEP00000003065	ENSODEP00000004293	annotation not available	Mediator complex subunit 12.	0.999
ENSODEP00000003065	MED13	ENSODEP00000003065	ENSODEP00000019622	annotation not available	Mediator complex subunit 13.	0.999
ENSODEP00000003065	MED14	ENSODEP00000003065	ENSODEP00000002000	annotation not available	Mediator complex subunit 14.	0.999
ENSODEP00000003065	MED18	ENSODEP00000003065	ENSODEP00000005002	annotation not available	Mediator complex subunit 18.	0.997
ENSODEP00000003065	MED19	ENSODEP00000003065	ENSODEP00000016077	annotation not available	Mediator complex subunit 19.	0.996
ENSODEP00000003065	MED22	ENSODEP00000003065	ENSODEP00000021369	annotation not available	Mediator complex subunit 22.	0.998
ENSODEP00000003065	MED23	ENSODEP00000003065	ENSODEP00000010651	annotation not available	Mediator complex subunit 23.	0.999
ENSODEP00000003065	MED30	ENSODEP00000003065	ENSODEP00000004318	annotation not available	Mediator complex subunit 30.	0.999
ENSODEP00000003065	MED9	ENSODEP00000003065	ENSODEP00000009251	annotation not available	Mediator complex subunit 9.	0.996