STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DUS4LDihydrouridine synthase 4 like. (317 aa)    
Predicted Functional Partners:
PSMB1
Proteasome 20S subunit beta 1.
   
 
  0.876
EPRS1
glutamyl-prolyl-tRNA synthetase 1.
  
 
 0.876
TRMT11
tRNA methyltransferase 11 homolog.
  
  
 0.873
PUS3
Pseudouridine synthase 3.
  
 
 0.797
NOP14
NOP14 nucleolar protein.
   
    0.778
PARS2
prolyl-tRNA synthetase 2, mitochondrial.
  
 
 0.759
WDR36
WD repeat domain 36.
   
   0.750
METTL1
Methyltransferase like 1.
  
 
 0.739
BOP1
BOP1 ribosomal biogenesis factor.
   
    0.734
THUMPD1
THUMP domain containing 1.
  
 
 0.731
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.