STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000002076annotation not available (313 aa)    
Predicted Functional Partners:
ENSODEP00000023215
annotation not available
   
 
  0.840
LRAT
Lecithin retinol acyltransferase.
     
 0.828
ENSODEP00000006486
annotation not available
  
  
 0.819
CYP26A1
Cytochrome P450 family 26 subfamily A member 1.
    
 0.818
RDH10
Retinol dehydrogenase 10.
  
  
0.816
HSD17B7
Hydroxysteroid 17-beta dehydrogenase 7.
     
 0.807
ALDH1A3
Aldehyde dehydrogenase 1 family member A3.
   
 
 0.807
HSD17B8
Hydroxysteroid 17-beta dehydrogenase 8.
  
  
 0.807
RDH8
Retinol dehydrogenase 8.
  
 
0.803
HSD17B1
Hydroxysteroid 17-beta dehydrogenase 1.
  
 
0.803
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
Server load: low (16%) [HD]