NCALD protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NCALD

Neurocalcin delta. (193 aa)

Predicted Functional Partners:

C1QTNF2

0.950

ENSODEP00000003147

0.927

ENSODEP00000004426

0.927

HPCA

0.927

GUCY2F

0.924

ENSODEP00000011142

0.918

GUCY2D

0.918

DLG4

0.891

ANKRD33B

0.869

VSNL1

0.867

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANKRD33B	DLG4	ENSODEP00000025201	ENSODEP00000023551	Ankyrin repeat domain 33B.	Discs large MAGUK scaffold protein 4.	0.464
ANKRD33B	ENSODEP00000003147	ENSODEP00000025201	ENSODEP00000003147	Ankyrin repeat domain 33B.	annotation not available	0.741
ANKRD33B	ENSODEP00000004426	ENSODEP00000025201	ENSODEP00000004426	Ankyrin repeat domain 33B.	annotation not available	0.741
ANKRD33B	HPCA	ENSODEP00000025201	ENSODEP00000007923	Ankyrin repeat domain 33B.	Hippocalcin.	0.741
ANKRD33B	NCALD	ENSODEP00000025201	ENSODEP00000002091	Ankyrin repeat domain 33B.	Neurocalcin delta.	0.869
ANKRD33B	VSNL1	ENSODEP00000025201	ENSODEP00000011499	Ankyrin repeat domain 33B.	Visinin like 1.	0.526
C1QTNF2	ENSODEP00000003147	ENSODEP00000014166	ENSODEP00000003147	C1q and TNF related 2.	annotation not available	0.615
C1QTNF2	ENSODEP00000004426	ENSODEP00000014166	ENSODEP00000004426	C1q and TNF related 2.	annotation not available	0.615
C1QTNF2	HPCA	ENSODEP00000014166	ENSODEP00000007923	C1q and TNF related 2.	Hippocalcin.	0.615
C1QTNF2	NCALD	ENSODEP00000014166	ENSODEP00000002091	C1q and TNF related 2.	Neurocalcin delta.	0.950
DLG4	ANKRD33B	ENSODEP00000023551	ENSODEP00000025201	Discs large MAGUK scaffold protein 4.	Ankyrin repeat domain 33B.	0.464
DLG4	ENSODEP00000003147	ENSODEP00000023551	ENSODEP00000003147	Discs large MAGUK scaffold protein 4.	annotation not available	0.812
DLG4	ENSODEP00000004426	ENSODEP00000023551	ENSODEP00000004426	Discs large MAGUK scaffold protein 4.	annotation not available	0.812
DLG4	HPCA	ENSODEP00000023551	ENSODEP00000007923	Discs large MAGUK scaffold protein 4.	Hippocalcin.	0.812
DLG4	NCALD	ENSODEP00000023551	ENSODEP00000002091	Discs large MAGUK scaffold protein 4.	Neurocalcin delta.	0.891
DLG4	VSNL1	ENSODEP00000023551	ENSODEP00000011499	Discs large MAGUK scaffold protein 4.	Visinin like 1.	0.683
ENSODEP00000003147	ANKRD33B	ENSODEP00000003147	ENSODEP00000025201	annotation not available	Ankyrin repeat domain 33B.	0.741
ENSODEP00000003147	C1QTNF2	ENSODEP00000003147	ENSODEP00000014166	annotation not available	C1q and TNF related 2.	0.615
ENSODEP00000003147	DLG4	ENSODEP00000003147	ENSODEP00000023551	annotation not available	Discs large MAGUK scaffold protein 4.	0.812
ENSODEP00000003147	ENSODEP00000011142	ENSODEP00000003147	ENSODEP00000011142	annotation not available	annotation not available	0.811