PRMT5 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PRMT5

Protein arginine methyltransferase 5. (629 aa)

Predicted Functional Partners:

WDR77

0.999

WDR33

0.995

ENSODEP00000005878

0.992

ENSODEP00000005918

0.992

ENSODEP00000005929

0.992

ENSODEP00000016532

0.992

ENSODEP00000017344

0.992

ENSODEP00000019568

0.992

SNRPD1

0.990

WEE1

0.982

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSODEP00000005878	PRMT5	ENSODEP00000005878	ENSODEP00000002136	annotation not available	Protein arginine methyltransferase 5.	0.992
ENSODEP00000005878	SNRPD1	ENSODEP00000005878	ENSODEP00000007732	annotation not available	Small nuclear ribonucleoprotein Sm D1.	0.992
ENSODEP00000005878	WDR33	ENSODEP00000005878	ENSODEP00000007755	annotation not available	WD repeat domain 33.	0.956
ENSODEP00000005878	WDR77	ENSODEP00000005878	ENSODEP00000010900	annotation not available	WD repeat domain 77.	0.986
ENSODEP00000005918	PRMT5	ENSODEP00000005918	ENSODEP00000002136	annotation not available	Protein arginine methyltransferase 5.	0.992
ENSODEP00000005918	SNRPD1	ENSODEP00000005918	ENSODEP00000007732	annotation not available	Small nuclear ribonucleoprotein Sm D1.	0.992
ENSODEP00000005918	WDR33	ENSODEP00000005918	ENSODEP00000007755	annotation not available	WD repeat domain 33.	0.956
ENSODEP00000005918	WDR77	ENSODEP00000005918	ENSODEP00000010900	annotation not available	WD repeat domain 77.	0.986
ENSODEP00000005929	PRMT5	ENSODEP00000005929	ENSODEP00000002136	annotation not available	Protein arginine methyltransferase 5.	0.992
ENSODEP00000005929	SNRPD1	ENSODEP00000005929	ENSODEP00000007732	annotation not available	Small nuclear ribonucleoprotein Sm D1.	0.992
ENSODEP00000005929	WDR33	ENSODEP00000005929	ENSODEP00000007755	annotation not available	WD repeat domain 33.	0.956
ENSODEP00000005929	WDR77	ENSODEP00000005929	ENSODEP00000010900	annotation not available	WD repeat domain 77.	0.986
ENSODEP00000016532	PRMT5	ENSODEP00000016532	ENSODEP00000002136	annotation not available	Protein arginine methyltransferase 5.	0.992
ENSODEP00000016532	SNRPD1	ENSODEP00000016532	ENSODEP00000007732	annotation not available	Small nuclear ribonucleoprotein Sm D1.	0.992
ENSODEP00000016532	WDR33	ENSODEP00000016532	ENSODEP00000007755	annotation not available	WD repeat domain 33.	0.956
ENSODEP00000016532	WDR77	ENSODEP00000016532	ENSODEP00000010900	annotation not available	WD repeat domain 77.	0.986
ENSODEP00000017344	PRMT5	ENSODEP00000017344	ENSODEP00000002136	annotation not available	Protein arginine methyltransferase 5.	0.992
ENSODEP00000017344	SNRPD1	ENSODEP00000017344	ENSODEP00000007732	annotation not available	Small nuclear ribonucleoprotein Sm D1.	0.992
ENSODEP00000017344	WDR33	ENSODEP00000017344	ENSODEP00000007755	annotation not available	WD repeat domain 33.	0.956
ENSODEP00000017344	WDR77	ENSODEP00000017344	ENSODEP00000010900	annotation not available	WD repeat domain 77.	0.986