PRMT5 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

PRMT5

Protein arginine methyltransferase 5. (629 aa)

Predicted Functional Partners:

WDR77

0.999

SNRPD1

0.989

COPRS

0.989

ENSODEP00000021839

0.988

TP53

0.981

RIOK1

0.979

LOC101566199

0.974

ENSODEP00000005878

0.972

ENSODEP00000005918

0.972

ENSODEP00000005929

0.972

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COPRS	ENSODEP00000005878	ENSODEP00000016122	ENSODEP00000005878	Coordinator of PRMT5 and differentiation stimulator.	annotation not available	0.816
COPRS	ENSODEP00000005918	ENSODEP00000016122	ENSODEP00000005918	Coordinator of PRMT5 and differentiation stimulator.	annotation not available	0.816
COPRS	ENSODEP00000005929	ENSODEP00000016122	ENSODEP00000005929	Coordinator of PRMT5 and differentiation stimulator.	annotation not available	0.816
COPRS	ENSODEP00000021839	ENSODEP00000016122	ENSODEP00000021839	Coordinator of PRMT5 and differentiation stimulator.	annotation not available	0.632
COPRS	PRMT5	ENSODEP00000016122	ENSODEP00000002136	Coordinator of PRMT5 and differentiation stimulator.	Protein arginine methyltransferase 5.	0.989
COPRS	RIOK1	ENSODEP00000016122	ENSODEP00000007592	Coordinator of PRMT5 and differentiation stimulator.	RIO kinase 1.	0.978
COPRS	WDR77	ENSODEP00000016122	ENSODEP00000010900	Coordinator of PRMT5 and differentiation stimulator.	WD repeat domain 77.	0.990
ENSODEP00000005878	COPRS	ENSODEP00000005878	ENSODEP00000016122	annotation not available	Coordinator of PRMT5 and differentiation stimulator.	0.816
ENSODEP00000005878	ENSODEP00000021839	ENSODEP00000005878	ENSODEP00000021839	annotation not available	annotation not available	0.880
ENSODEP00000005878	LOC101566199	ENSODEP00000005878	ENSODEP00000021725	annotation not available	Survival of motor neuron protein-like.	0.867
ENSODEP00000005878	PRMT5	ENSODEP00000005878	ENSODEP00000002136	annotation not available	Protein arginine methyltransferase 5.	0.972
ENSODEP00000005878	RIOK1	ENSODEP00000005878	ENSODEP00000007592	annotation not available	RIO kinase 1.	0.583
ENSODEP00000005878	SNRPD1	ENSODEP00000005878	ENSODEP00000007732	annotation not available	Small nuclear ribonucleoprotein Sm D1.	0.968
ENSODEP00000005878	WDR77	ENSODEP00000005878	ENSODEP00000010900	annotation not available	WD repeat domain 77.	0.967
ENSODEP00000005918	COPRS	ENSODEP00000005918	ENSODEP00000016122	annotation not available	Coordinator of PRMT5 and differentiation stimulator.	0.816
ENSODEP00000005918	ENSODEP00000021839	ENSODEP00000005918	ENSODEP00000021839	annotation not available	annotation not available	0.880
ENSODEP00000005918	LOC101566199	ENSODEP00000005918	ENSODEP00000021725	annotation not available	Survival of motor neuron protein-like.	0.867
ENSODEP00000005918	PRMT5	ENSODEP00000005918	ENSODEP00000002136	annotation not available	Protein arginine methyltransferase 5.	0.972
ENSODEP00000005918	RIOK1	ENSODEP00000005918	ENSODEP00000007592	annotation not available	RIO kinase 1.	0.583
ENSODEP00000005918	SNRPD1	ENSODEP00000005918	ENSODEP00000007732	annotation not available	Small nuclear ribonucleoprotein Sm D1.	0.952