BBS7 protein (Octodon degus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BBS7

Bardet-Biedl syndrome 7. (714 aa)

Predicted Functional Partners:

TTC8

0.999

ENSODEP00000010439

0.999

BBS2

0.999

ENSODEP00000024107

0.999

LZTFL1

0.996

ENSODEP00000015840

0.994

ENSODEP00000020315

0.993

ENSODEP00000025060

0.993

ENSODEP00000013164

0.992

BBS12

0.989

Your Current Organism:

Octodon degus

NCBI taxonomy Id: 10160
Other names: O. degus, degu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BBS12	BBS2	ENSODEP00000001328	ENSODEP00000023725	Bardet-Biedl syndrome 12.	Bardet-Biedl syndrome 2.	0.914
BBS12	BBS7	ENSODEP00000001328	ENSODEP00000002292	Bardet-Biedl syndrome 12.	Bardet-Biedl syndrome 7.	0.989
BBS12	ENSODEP00000010439	ENSODEP00000001328	ENSODEP00000010439	Bardet-Biedl syndrome 12.	annotation not available	0.923
BBS12	ENSODEP00000013164	ENSODEP00000001328	ENSODEP00000013164	Bardet-Biedl syndrome 12.	annotation not available	0.756
BBS12	ENSODEP00000015840	ENSODEP00000001328	ENSODEP00000015840	Bardet-Biedl syndrome 12.	annotation not available	0.795
BBS12	ENSODEP00000020315	ENSODEP00000001328	ENSODEP00000020315	Bardet-Biedl syndrome 12.	annotation not available	0.858
BBS12	ENSODEP00000024107	ENSODEP00000001328	ENSODEP00000024107	Bardet-Biedl syndrome 12.	annotation not available	0.915
BBS12	ENSODEP00000025060	ENSODEP00000001328	ENSODEP00000025060	Bardet-Biedl syndrome 12.	annotation not available	0.858
BBS12	LZTFL1	ENSODEP00000001328	ENSODEP00000016712	Bardet-Biedl syndrome 12.	Leucine zipper transcription factor like 1.	0.622
BBS12	TTC8	ENSODEP00000001328	ENSODEP00000009124	Bardet-Biedl syndrome 12.	Tetratricopeptide repeat domain 8.	0.841
BBS2	BBS12	ENSODEP00000023725	ENSODEP00000001328	Bardet-Biedl syndrome 2.	Bardet-Biedl syndrome 12.	0.914
BBS2	BBS7	ENSODEP00000023725	ENSODEP00000002292	Bardet-Biedl syndrome 2.	Bardet-Biedl syndrome 7.	0.999
BBS2	ENSODEP00000010439	ENSODEP00000023725	ENSODEP00000010439	Bardet-Biedl syndrome 2.	annotation not available	0.999
BBS2	ENSODEP00000013164	ENSODEP00000023725	ENSODEP00000013164	Bardet-Biedl syndrome 2.	annotation not available	0.987
BBS2	ENSODEP00000015840	ENSODEP00000023725	ENSODEP00000015840	Bardet-Biedl syndrome 2.	annotation not available	0.993
BBS2	ENSODEP00000020315	ENSODEP00000023725	ENSODEP00000020315	Bardet-Biedl syndrome 2.	annotation not available	0.994
BBS2	ENSODEP00000024107	ENSODEP00000023725	ENSODEP00000024107	Bardet-Biedl syndrome 2.	annotation not available	0.999
BBS2	ENSODEP00000025060	ENSODEP00000023725	ENSODEP00000025060	Bardet-Biedl syndrome 2.	annotation not available	0.994
BBS2	LZTFL1	ENSODEP00000023725	ENSODEP00000016712	Bardet-Biedl syndrome 2.	Leucine zipper transcription factor like 1.	0.996
BBS2	TTC8	ENSODEP00000023725	ENSODEP00000009124	Bardet-Biedl syndrome 2.	Tetratricopeptide repeat domain 8.	0.999