STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5orf22Chromosome 5 open reading frame 22. (445 aa)    
Predicted Functional Partners:
FJX1
Four-jointed box kinase 1.
   
 0.913
LIX1L
Limb and CNS expressed 1 like.
   
 0.890
LIX1
Limb and CNS expressed 1.
   
 0.890
ENSODEP00000006019
annotation not available
   
    0.833
UGT3A2
UDP glycosyltransferase family 3 member A2.
   
    0.833
FRMD6
FERM domain containing 6.
    
 0.832
CWC25
CWC25 spliceosome associated protein homolog.
   
    0.831
RUBCNL
Rubicon like autophagy enhancer.
   
   0.828
ATN1
Atrophin 1.
    
 0.823
RERE
Arginine-glutamic acid dipeptide repeats.
    
 0.823
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.