STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000002704annotation not available (159 aa)    
Predicted Functional Partners:
EIF4A3
Eukaryotic translation initiation factor 4A3.
   
 0.995
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
    
 0.994
PYM1
PYM homolog 1, exon junction complex associated factor.
    
 0.994
CASC3
CASC3 exon junction complex subunit.
   
 0.994
UPF1
UPF1 RNA helicase and ATPase.
    
 0.993
ENSODEP00000015551
annotation not available
   
 0.992
MAGOH
Mago homolog, exon junction complex subunit.
   
 0.990
IPO13
Importin 13.
    
 0.989
SMG7
SMG7 nonsense mediated mRNA decay factor.
    
 0.985
ENSODEP00000001555
annotation not available
   
 0.984
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.