STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSODEP00000002778annotation not available (700 aa)    
Predicted Functional Partners:
DHX9
DExH-box helicase 9.
   
 0.949
TEP1
Telomerase associated protein 1.
    
 0.906
ENSODEP00000024149
annotation not available
   
 0.896
SYNCRIP
Synaptotagmin binding cytoplasmic RNA interacting protein.
   
 0.894
SRSF9
Serine and arginine rich splicing factor 9.
   
 0.883
ENSODEP00000015551
annotation not available
   
 0.881
ENSODEP00000001036
annotation not available
   
 0.871
ENSODEP00000006558
annotation not available
   
 0.871
ENSODEP00000007291
annotation not available
   
 0.871
SMG7
SMG7 nonsense mediated mRNA decay factor.
    
 0.869
Your Current Organism:
Octodon degus
NCBI taxonomy Id: 10160
Other names: O. degus, degu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.